CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 4
plastid 2
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH04325
KRH28281
KRH45246
KRH58212
KRH74183
KRH75396

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G32530.1	KRH45246	AT1G13330.1	19187040
AT1G32530.1	KRH75396	AT1G13330.1	19187040
AT1G32530.1	KRH04325	AT1G32530.1	19187040
AT1G32530.1	KRH28281	AT1G32530.1	19187040
AT1G32530.1	KRH58212	AT1G32530.1	19187040
AT1G32530.1	KRH74183	AT4G29170.1	19187040

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH04325	Soybean	nucleus	58.05	57.88
KRH58212	Soybean	nucleus	60.56	57.18
Bra005352.1-P	Field mustard	nucleus	23.63	51.95
VIT_02s0012g01020.t01	Wine grape	nucleus	53.32	49.93
CDX84219	Canola	mitochondrion, nucleus	43.43	49.66
CDY31680	Canola	mitochondrion, nucleus	39.29	46.91
Bra023274.1-P	Field mustard	nucleus	46.53	45.85
CDX93827	Canola	cytosol	46.53	45.85
CDY01268	Canola	cytosol	46.38	45.71
AT2G35330.1	Thale cress	endoplasmic reticulum	46.97	43.09
AT1G32530.1	Thale cress	cytosol	44.61	42.48
PGSC0003DMT400052886	Potato	nucleus	45.35	42.46
GSMUA_Achr1P24020_001	Banana	mitochondrion, nucleus	41.8	42.11
Solyc08g006980.2.1	Tomato	nucleus	43.87	41.02
GSMUA_Achr7P04700_001	Banana	mitochondrion, nucleus	40.62	40.62
Solyc08g077100.2.1	Tomato	nucleus	24.96	39.95
Os09t0371700-01	Rice	nucleus	10.78	34.27
KXG35515	Sorghum	mitochondrion	31.17	32.76
Zm00001d020292_P001	Maize	mitochondrion, nucleus	30.43	32.14
TraesCS5A01G189000.1	Wheat	mitochondrion	30.43	31.26
TraesCS5D01G202000.1	Wheat	mitochondrion	30.28	31.11
TraesCS5B01G194700.1	Wheat	mitochondrion	30.13	30.96
HORVU5Hr1G058760.1	Barley	plastid	29.25	27.31
OQU93157	Sorghum	plastid	7.53	23.29
KRH02160	Soybean	nucleus	29.39	22.69
KRH20958	Soybean	nucleus, plastid	28.51	21.86
KRH11313	Soybean	nucleus, plastid	27.92	21.36
KRH50955	Soybean	nucleus	27.92	21.24
KRH71485	Soybean	cytosol, endoplasmic reticulum, nucleus	22.01	17.87

Protein Annotations

EntrezGene:100789166	Gene3D:3.30.40.10	MapMan:35.1	EMBL:ACUP02006743	ncoils:Coil	EnsemblPlantsGene:GLYMA_11G042600
GO:GO:0003674	GO:GO:0003824	GO:GO:0004842	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0006464	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0008152
GO:GO:0009966	GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	UniProt:I1LH09
InterPro:IPR001841	InterPro:IPR013083	EnsemblPlants:KRH28281	ProteinID:KRH28281	ProteinID:KRH28281.1	PFAM:PF13920
PFscan:PS50089	PANTHER:PTHR10044	PANTHER:PTHR10044:SF133	SUPFAM:SSF57850	UniParc:UPI000233CE4C	InterPro:Znf_RING
InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr11:-:3117901..3121711

Molecular Weight (calculated)

75842.0 Da

IEP (calculated)

6.704

GRAVY (calculated)

-0.554

Length

677 amino acids

Sequence
(BLAST)

001: MKNKNSRANR KARSVKPPDS CLSSSNSNKK WMVPYKFYDV KGPNSESNPN VDSSSWVLCT EVQLETILLK NIEIIYNDTV PKLVALGYSE EIAVKAILYN
101: GHCYGANDLA TNVLHNSLAC LTTGTLDLSE SSPAFPDMKK LQEYSLMNLV SLLKEVRPDL SRGDAMWCLL MSNFHVLKAG AIPVPVGNTC PPPPPPLPEL
201: ENTGWRFAKE GGLGFPLNGL FSDTDMTIRL QRDIEFPKRF DLTPAMKSLL KRNVAMFADG FRANSKQVQP QASEFPRTGS VSKLGSSSAS GTAAVLGEQP
301: GDSHNQNDQE DLNSVMSKFL DLNIDDNVEF VPEDDKEEVI VTLVNQIKDL EKQVKERKDW AHEKAIQAAK KLSSDLIELK KFKMEREENK KLPKETGAAE
401: ELDNPTMMRL SEMENALRKT SGQMDQATAA VRKLEAEKAE IKAELEASKL SASESVTSCL QVAKREKKCL KKLLTWEKQK VKIHQDISDE KQKILEIQEE
501: LAQIKQCAKE TEVTRKEELK AKEEALALIE EERRSKEAAE ANHKRNLKAL RLKIEIDFQR RKDDLLRLEQ EISRLKAPAR STTLPTSESE DAEPQRETLA
601: KLLLELDNVK DFSGKEINGD RECIICGKDE VSVIFLPCAH QVMCARCGKE YGKKGKAVCP CCRVPIEERI PIFGACS

Best Arabidopsis Sequence Match ( AT2G35330.2 )
(BLAST)

001: MGCTVREKHV RPNRKTRSVK PEFDPCCLLD RTALSKSIVE SSLKHLVYHP GLLDSCPESN PSGSFEDNNG WGYCTEEQLE DILLKHLEYL YNEAISKLVG
101: SGYDEDVALR AVLSNGYCYG GMDVMTNILH NSLAYLKSNT GEGSNVNNED QSETVFTDLR QLEEYSLAGM VYLLQQVKPN LSKGDAMWCL LMSELHVGRA
201: STMDIPSSGK GDSSNVGVGG ASSTVNGVGG AIAPALCRFH GGWGFGNGKG PKFSGNGFSL HSEELTLQRE IDCPRRFNLS PSMKSLLREN VAAFAAGYRA
301: SMEQKKQVQM QSETSGTSLS CTAAATHSEK CEQPHVFGSE ECFSSVLEKF RDLNLDDNVD SAPEELKDDA LIGLLQQVQD LKKQLKERKD WAQKKAMQAA
401: QKVSDELSEL KSLRSEREEI QRVKKGKQTR EDSTLKKLSE MENALRKASG QVDKANAVVR ALENESAEIR AEMEASKLSA SESLTACMEA SKKEKKCLKK
501: LLAWEKQKMK LQDEITAEKE KIKALNRALA QITQEEKEYE AKWRQEQKAK EQVLAQVEEE QRSKEAIEAS NKRKVESLRL KIEIDFQRHK DDLQRLEQEL
601: SRLNKASSTD SSLQSNNTSH TKVKSDKSKG ETMSKLLEEL NRLDGSYEKE ANYDRECLIC MKDEVSVVFL PCAHQVVCAS CSDSFMGSGK ATCPCCRAPV
701: QQRIRVFGAS S

Arabidopsis Description

RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q8L7B1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.