Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- mitochondrion 3
- cytosol 3
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra023274.1-P | Field mustard | nucleus | 71.03 | 73.51 |
| CDX93827 | Canola | cytosol | 71.03 | 73.51 |
| CDY01268 | Canola | cytosol | 69.48 | 71.91 |
| AT2G35330.1 | Thale cress | endoplasmic reticulum | 63.01 | 60.7 |
| KRH58212 | Soybean | nucleus | 55.7 | 55.23 |
| KRH04325 | Soybean | nucleus | 51.48 | 53.9 |
| VIT_02s0012g01020.t01 | Wine grape | nucleus | 52.74 | 51.87 |
| PGSC0003DMT400052886 | Potato | nucleus | 46.98 | 46.2 |
| Solyc08g006980.2.1 | Tomato | nucleus | 46.13 | 45.3 |
| KRH28281 | Soybean | nucleus, plastid | 42.48 | 44.61 |
| GSMUA_Achr1P24020_001 | Banana | mitochondrion, nucleus | 41.21 | 43.6 |
| GSMUA_Achr7P04700_001 | Banana | mitochondrion, nucleus | 38.96 | 40.92 |
| Solyc08g077100.2.1 | Tomato | nucleus | 23.21 | 39.01 |
| TraesCS5D01G202000.1 | Wheat | mitochondrion | 30.66 | 33.08 |
| TraesCS5A01G189000.1 | Wheat | mitochondrion | 30.66 | 33.08 |
| TraesCS5B01G194700.1 | Wheat | mitochondrion | 30.52 | 32.93 |
| KXG35515 | Sorghum | mitochondrion | 29.54 | 32.61 |
| Zm00001d020292_P001 | Maize | mitochondrion, nucleus | 29.25 | 32.45 |
| Os09t0371700-01 | Rice | nucleus | 9.7 | 32.39 |
| OQU93157 | Sorghum | plastid | 9.56 | 31.05 |
| HORVU5Hr1G058760.1 | Barley | plastid | 29.96 | 29.38 |
| AT1G03365.2 | Thale cress | nucleus | 25.6 | 22.11 |
| AT4G03000.2 | Thale cress | nucleus | 23.91 | 20.88 |
Protein Annotations
| Gene3D:3.30.40.10 | MapMan:35.1 | EntrezGene:840147 | UniProt:A0A178WER4 | ProteinID:AAF81351.1 | ProteinID:AAG51242.1 |
| ProteinID:AEE31497.1 | ArrayExpress:AT1G32530 | EnsemblPlantsGene:AT1G32530 | RefSeq:AT1G32530 | TAIR:AT1G32530 | RefSeq:AT1G32530-TAIR-G |
| EnsemblPlants:AT1G32530.1 | TAIR:AT1G32530.1 | EMBL:AY090954 | EMBL:AY133855 | Unigene:At.40122 | ncoils:Coil |
| GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004842 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0006464 | GO:GO:0007154 | GO:GO:0007165 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009966 | GO:GO:0009987 | GO:GO:0016567 | GO:GO:0016740 |
| GO:GO:0019538 | GO:GO:0046872 | InterPro:IPR001841 | InterPro:IPR013083 | RefSeq:NP_174531.1 | ProteinID:OAP15863.1 |
| PFAM:PF13920 | PO:PO:0000013 | PO:PO:0000084 | PO:PO:0000230 | PO:PO:0000282 | PO:PO:0000293 |
| PO:PO:0001016 | PO:PO:0001017 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 |
| PO:PO:0004507 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 |
| PO:PO:0007611 | PO:PO:0007616 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 |
| PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 |
| PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 |
| PO:PO:0025022 | PO:PO:0025195 | PO:PO:0025281 | PFscan:PS50089 | PANTHER:PTHR10044 | PANTHER:PTHR10044:SF133 |
| UniProt:Q8RX22 | SUPFAM:SSF57850 | UniParc:UPI000009FB13 | InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | SEG:seg |
Description
MIP1MND1-interacting protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8RX22]
Coordinates
chr1:-:11759427..11762635
Molecular Weight (calculated)
79332.0 Da
IEP (calculated)
6.349
GRAVY (calculated)
-0.616
Length
711 amino acids
Sequence
(BLAST)
(BLAST)
001: MGCTVREKHV KPTRRIKAAA FRSDPPLCWV EKIAMSQSIV ENLVYHPGLT DSGSVNLNSV TENPEENFWA YCTEEHLEEI LLKHLEFLYN QAVSKLLELG
101: YEERVALKAV LSNGHCYGEL DVLTNIVNNS LSYLNSGGGG GGSNGNGEDR TETGFTDLRD LEEYSLAGMI YLLQQVKPNL SKGDAMWCLL MSELHVGRAS
201: TLDVPTNRSS CCTKEDSNVE DVGTGGTLDI AGFMAPALCR FHGGWGFGNG GGPEFSGNGF SMKGAELKLQ REIDCPKRFN LSPSMKSLLK RNVAAFAAGY
301: RASMKQKQIQ SSDTIGDSKA CNDPAIVKSC GQQPRKSGSE ESVSTVLEKF RDLNLDDNLE SVGVDDKDCV IVDLLHQVKD FEKKVKERKE WAQKNAMQAA
401: QKVSEELAEL KTLSSEREGI QLLKKGKQAV EESTAKRFTD KEIELRKACS QNDRANVIVR KLENQNAEIR AEREGSKLSA SESLKACMEA SKKEKKCLKK
501: LVAWEKQILK LQDEITAEKE KIKALYKTLA QITEYEKEIE AKWRQEQKAK EEALAQMEEE QRSKEAAEGH NKRKLETLRL KIELDFQRHK DDHQRLEQEL
601: GRLKASSDSD SSHISNNAWK PKKSQGENIA KLLEEIDKLE GSYDNEANYD RECIICMKDE VSVVFLPCAH QVVCGSCSDS FFASNNGGSK VTCPCCRGLV
701: QQRIRIFGAT S
101: YEERVALKAV LSNGHCYGEL DVLTNIVNNS LSYLNSGGGG GGSNGNGEDR TETGFTDLRD LEEYSLAGMI YLLQQVKPNL SKGDAMWCLL MSELHVGRAS
201: TLDVPTNRSS CCTKEDSNVE DVGTGGTLDI AGFMAPALCR FHGGWGFGNG GGPEFSGNGF SMKGAELKLQ REIDCPKRFN LSPSMKSLLK RNVAAFAAGY
301: RASMKQKQIQ SSDTIGDSKA CNDPAIVKSC GQQPRKSGSE ESVSTVLEKF RDLNLDDNLE SVGVDDKDCV IVDLLHQVKD FEKKVKERKE WAQKNAMQAA
401: QKVSEELAEL KTLSSEREGI QLLKKGKQAV EESTAKRFTD KEIELRKACS QNDRANVIVR KLENQNAEIR AEREGSKLSA SESLKACMEA SKKEKKCLKK
501: LVAWEKQILK LQDEITAEKE KIKALYKTLA QITEYEKEIE AKWRQEQKAK EEALAQMEEE QRSKEAAEGH NKRKLETLRL KIELDFQRHK DDHQRLEQEL
601: GRLKASSDSD SSHISNNAWK PKKSQGENIA KLLEEIDKLE GSYDNEANYD RECIICMKDE VSVVFLPCAH QVVCGSCSDS FFASNNGGSK VTCPCCRGLV
701: QQRIRIFGAT S
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.