Factsheet for Bra023274.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra019825.1-P
Bra023274.1-P
Bra024159.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G32530.1	Bra019825.1-P	AT1G13330.1	19187040
AT1G32530.1	Bra023274.1-P	AT1G32530.1	19187040
AT1G32530.1	Bra024159.1-P	AT4G29170.1	19187040

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX93827	Canola	cytosol	99.56	99.56
AT1G32530.1	Thale cress	cytosol	73.51	71.03
Bra005352.1-P	Field mustard	nucleus	30.28	67.53
KRH58212	Soybean	nucleus	58.08	55.65
KRH04325	Soybean	nucleus	54.15	54.79
VIT_02s0012g01020.t01	Wine grape	nucleus	54.44	51.73
KRH28281	Soybean	nucleus, plastid	45.85	46.53
PGSC0003DMT400052886	Potato	nucleus	48.47	46.06
Solyc08g006980.2.1	Tomato	nucleus	47.6	45.17
GSMUA_Achr1P24020_001	Banana	mitochondrion, nucleus	41.34	42.26
GSMUA_Achr7P04700_001	Banana	mitochondrion, nucleus	40.03	40.62
Solyc08g077100.2.1	Tomato	nucleus	24.45	39.72
TraesCS5A01G189000.1	Wheat	mitochondrion	32.46	33.84
TraesCS5B01G194700.1	Wheat	mitochondrion	32.17	33.54
TraesCS5D01G202000.1	Wheat	mitochondrion	32.17	33.54
Os09t0371700-01	Rice	nucleus	10.33	33.33
KXG35515	Sorghum	mitochondrion	30.71	32.76
Zm00001d020292_P001	Maize	mitochondrion, nucleus	30.57	32.76
HORVU5Hr1G058760.1	Barley	plastid	31.73	30.07
Bra033393.1-P	Field mustard	nucleus	11.5	29.37
OQU93157	Sorghum	plastid	9.17	28.77
Bra036227.1-P	Field mustard	plastid	23.44	22.8

Protein Annotations

EnsemblPlants:Bra023274.1	EnsemblPlants:Bra023274.1-P	EnsemblPlantsGene:Bra023274	Gene3D:3.30.40.10	InterPro:IPR001841	InterPro:IPR013083
InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	ncoils:Coil	PANTHER:PTHR10044	PANTHER:PTHR10044:SF133	PFAM:PF13920
PFscan:PS50089	SEG:seg	SMART:SM00184	SUPFAM:SSF57850	UniParc:UPI0002542277	UniProt:M4E3C3
MapMan:35.1	:	:	:	:	:

Description

AT1G32530 (E=1e-133) | zinc finger (C3HC4-type RING finger) family protein

Coordinates

chrA09:+:20040119..20042535

Molecular Weight (calculated)

76620.5 Da

IEP (calculated)

5.623

GRAVY (calculated)

-0.626

Length

687 amino acids

Sequence
(BLAST)

001: MGCTVRDKHV RAARKIRPAY KPELDLDRVA LSKSIVESSL KNLVYHPGLT GSTSGACCVH SGTSFEESVW GYCTEENLQE ILLKHLEFLY DQAVSKLIDL
101: GCEESVAMRA VLSNGHCYGE SDVLKNIVNN SLSYLNSSSS SNGDQSETGF TDLRDLEEYS LDGMVYLLQQ VRPSFSKGDA MWCLLMSELH VGKASTMDLP
201: NRGTCCAKED SHGEGTLDLA GFMAPALCRF HGGWDFGNGG GPEFSGKGFS MNNAELKLQR EIECPRRFNL SPTMKSLLKR NVAAFAAGFR ASMKQKQIDD
301: GTSGEGADPT HVESEESVGS VLEKFRDLNL DDNLESVGED DKDGVIVTLL HQVKDLEKKL KERKEWAQKK AMQAAQKVSD ELTELKSLNS ERESIQMLKK
401: GKQAVDESTV KRLSELENAV RKATCQRDTA NAIVRTLENQ NAEIRAEREG LKLSASESIK ACTEESKKEK KCMKKLLAWE KQKLKLQDEI TAEKEKIKAL
501: YKSLAQITQD EKEIEAKRVE EQKAKEQALA QVEDEQRSKE AAEAHNKRKL ETLRLKIELD FQRHKDDHQR LEQELSRLKA SSDTDSSHLS SNVWEPERSQ
601: GENIAKLLEE LDRLEGSYES EANNDRECII CMKDEVSVVF LPCAHQVVCG SCSDNFFSSN NGGGGKVTCP CCRAVVQQRI HIFGATS

Best Arabidopsis Sequence Match ( AT1G32530.1 )
(BLAST)

001: MGCTVREKHV KPTRRIKAAA FRSDPPLCWV EKIAMSQSIV ENLVYHPGLT DSGSVNLNSV TENPEENFWA YCTEEHLEEI LLKHLEFLYN QAVSKLLELG
101: YEERVALKAV LSNGHCYGEL DVLTNIVNNS LSYLNSGGGG GGSNGNGEDR TETGFTDLRD LEEYSLAGMI YLLQQVKPNL SKGDAMWCLL MSELHVGRAS
201: TLDVPTNRSS CCTKEDSNVE DVGTGGTLDI AGFMAPALCR FHGGWGFGNG GGPEFSGNGF SMKGAELKLQ REIDCPKRFN LSPSMKSLLK RNVAAFAAGY
301: RASMKQKQIQ SSDTIGDSKA CNDPAIVKSC GQQPRKSGSE ESVSTVLEKF RDLNLDDNLE SVGVDDKDCV IVDLLHQVKD FEKKVKERKE WAQKNAMQAA
401: QKVSEELAEL KTLSSEREGI QLLKKGKQAV EESTAKRFTD KEIELRKACS QNDRANVIVR KLENQNAEIR AEREGSKLSA SESLKACMEA SKKEKKCLKK
501: LVAWEKQILK LQDEITAEKE KIKALYKTLA QITEYEKEIE AKWRQEQKAK EEALAQMEEE QRSKEAAEGH NKRKLETLRL KIELDFQRHK DDHQRLEQEL
601: GRLKASSDSD SSHISNNAWK PKKSQGENIA KLLEEIDKLE GSYDNEANYD RECIICMKDE VSVVFLPCAH QVVCGSCSDS FFASNNGGSK VTCPCCRGLV
701: QQRIRIFGAT S

Arabidopsis Description

MIP1MND1-interacting protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8RX22]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.