Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, nucleus
Predictor Summary:
Predictor Summary:
- mitochondrion 4
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Zm00001d005140_P003 | |
| Zm00001d013447_P001 | |
| Zm00001d020292_P001 | |
| Zm00001d033716_P001 |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KXG35515 | Sorghum | mitochondrion | 92.36 | 91.93 |
| Os09t0371700-01 | Rice | nucleus | 22.31 | 67.14 |
| TraesCS5A01G189000.1 | Wheat | mitochondrion | 63.81 | 62.06 |
| TraesCS5D01G202000.1 | Wheat | mitochondrion | 63.34 | 61.61 |
| TraesCS5B01G194700.1 | Wheat | mitochondrion | 63.18 | 61.46 |
| HORVU5Hr1G058760.1 | Barley | plastid | 61.78 | 54.62 |
| Bra005352.1-P | Field mustard | nucleus | 19.5 | 40.58 |
| GSMUA_Achr1P24020_001 | Banana | mitochondrion, nucleus | 41.81 | 39.88 |
| GSMUA_Achr7P04700_001 | Banana | mitochondrion, nucleus | 40.72 | 38.55 |
| CDX84219 | Canola | mitochondrion, nucleus | 31.98 | 34.63 |
| KRH04325 | Soybean | nucleus | 36.51 | 34.46 |
| CDY31680 | Canola | mitochondrion, nucleus | 29.8 | 33.69 |
| Solyc08g077100.2.1 | Tomato | nucleus | 22.15 | 33.57 |
| VIT_02s0012g01020.t01 | Wine grape | nucleus | 37.44 | 33.2 |
| KRH58212 | Soybean | nucleus | 36.19 | 32.36 |
| Solyc08g006980.2.1 | Tomato | nucleus | 35.1 | 31.08 |
| PGSC0003DMT400052886 | Potato | nucleus | 34.95 | 30.98 |
| Bra023274.1-P | Field mustard | nucleus | 32.76 | 30.57 |
| KRH28281 | Soybean | nucleus, plastid | 32.14 | 30.43 |
| CDX93827 | Canola | cytosol | 32.61 | 30.42 |
| CDY01268 | Canola | cytosol | 31.67 | 29.55 |
| AT2G35330.1 | Thale cress | endoplasmic reticulum | 33.7 | 29.27 |
| AT1G32530.1 | Thale cress | cytosol | 32.45 | 29.25 |
| Zm00001d006317_P002 | Maize | plastid | 22.0 | 16.47 |
| Zm00001d005154_P001 | Maize | nucleus | 19.03 | 15.5 |
| Zm00001d021404_P001 | Maize | cytosol | 22.0 | 12.47 |
Protein Annotations
| EMBL:EU975857 | EnsemblPlants:Zm00001d020292_P001 | EnsemblPlants:Zm00001d020292_T001 | EnsemblPlantsGene:Zm00001d020292 | EntrezGene:100278886 | Gene3D:3.30.40.10 |
| InterPro:IPR013083 | InterPro:Znf_RING/FYVE/PHD | ncoils:Coil | PANTHER:PTHR10044 | PANTHER:PTHR10044:SF165 | ProteinID:ONM54659.1 |
| SEG:seg | UniParc:UPI000182F776 | UniProt:B6UF42 | MapMan:35.1 | : | : |
Description
MND1-interacting protein 1
Coordinates
chr7:-:104441556..104448455
Molecular Weight (calculated)
71059.2 Da
IEP (calculated)
7.408
GRAVY (calculated)
-0.731
Length
641 amino acids
Sequence
(BLAST)
(BLAST)
001: MAGQPRERGS RSSRKGRSAR AGLAQAPPPA SDPDLTVGED AAPWLRATAD ELEERLLKRL DEAYAAALAR LADLGHGEEA SLEAVLHSGH CYGKLNDPVS
101: NIVANARAYL SDPGHASAAG GFADLRRLEE YSLAGLVCLL QSSRPTLTRA EALWCLLSSD LRIEEAIAIS SSFNGEPSSI AESEEHLPAV AETAQRGYIH
201: YHNTTATAAQ DPTLFDPEAF MRLAICQGPA AATISCLKAA GWSRSSGAAP EGQPRESFTK KLSTEELIES VVAELEALDI DKKDPPDANP DPKNQMAREL
301: IKQTREMETQ LKERKEWAQG KAIQAARKLG ADLTELRVLR MEHDENQRRK KEKQVMEDDT MKRLAHLENE LKKKSGQLDR SNATVQRLEM ENAEIRAEME
401: AAKLSASETE KQCQGLLRKE KKDSKRLEVW ERQKAKLKED IAECKTNITQ AERELAEVNK AIKNMEKKMR EDTRVKEENM VLLEDERRKK EAAKADNDRR
501: LEELRRKKEV ESECYKDDLH RLQDELSRLQ KSAGATQTAV PSANFPGTAN RSAAQAAKQQ AILRPQPASN RSLPPPAQKP SRRRDCVACK KAAACVILLQ
601: CAHQVLCVGC NKLHEDKGIT RCPCCSAEVE ERIRVFGASS N
101: NIVANARAYL SDPGHASAAG GFADLRRLEE YSLAGLVCLL QSSRPTLTRA EALWCLLSSD LRIEEAIAIS SSFNGEPSSI AESEEHLPAV AETAQRGYIH
201: YHNTTATAAQ DPTLFDPEAF MRLAICQGPA AATISCLKAA GWSRSSGAAP EGQPRESFTK KLSTEELIES VVAELEALDI DKKDPPDANP DPKNQMAREL
301: IKQTREMETQ LKERKEWAQG KAIQAARKLG ADLTELRVLR MEHDENQRRK KEKQVMEDDT MKRLAHLENE LKKKSGQLDR SNATVQRLEM ENAEIRAEME
401: AAKLSASETE KQCQGLLRKE KKDSKRLEVW ERQKAKLKED IAECKTNITQ AERELAEVNK AIKNMEKKMR EDTRVKEENM VLLEDERRKK EAAKADNDRR
501: LEELRRKKEV ESECYKDDLH RLQDELSRLQ KSAGATQTAV PSANFPGTAN RSAAQAAKQQ AILRPQPASN RSLPPPAQKP SRRRDCVACK KAAACVILLQ
601: CAHQVLCVGC NKLHEDKGIT RCPCCSAEVE ERIRVFGASS N
001: MIFTLSISVE FFFSFRFSYI HRRALTLMGC TVREKHVRPN RKTRSVKPEF DPCCLLDRTA LSKSIVESSL KHLVYHPGLL DSCPESNPSG SFEDNNGWGY
101: CTEEQLEDIL LKHLEYLYNE AISKLVGSGY DEDVALRAVL SNGYCYGGMD VMTNILHNSL AYLKSNTGEG SNVNNEDQSE TVFTDLRQLE EYSLAGMVYL
201: LQQVKPNLSK GDAMWCLLMS ELHVGRASTM DIPSSGKGDS SNVGVGGASS TVNGVGGAIA PALCRFHGGW GFGNGKGPKF SGNGFSLHSE ELTLQREIDC
301: PRRFNLSPSM KSLLRENVAA FAAGYRASME QKKQVQMQSE TSGTSLSCTA AATHSEKCEQ PHVFGSEECF SSVLEKFRDL NLDDNVDSAP EELKDDALIG
401: LLQQVQDLKK QLKERKDWAQ KKAMQAAQKV SDELSELKSL RSEREEIQRV KKGKQTREDS TLKKLSEMEN ALRKASGQVD KANAVVRALE NESAEIRAEM
501: EASKLSASES LTACMEASKK EKKCLKKLLA WEKQKMKLQD EITAEKEKIK ALNRALAQIT QEEKEYEAKW RQEQKAKEQV LAQVEEEQRS KEAIEASNKR
601: KVESLRLKIE IDFQRHKDDL QRLEQELSRL NKASSTDSSL QSNNTSHTKV KSDKSKGETM SKLLEELNRL DGSYEKEANY DRECLICMKD EVSVVFLPCA
701: HQVVCASCSD SFMGSGKATC PCCRAPVQQR IRVFGASS
101: CTEEQLEDIL LKHLEYLYNE AISKLVGSGY DEDVALRAVL SNGYCYGGMD VMTNILHNSL AYLKSNTGEG SNVNNEDQSE TVFTDLRQLE EYSLAGMVYL
201: LQQVKPNLSK GDAMWCLLMS ELHVGRASTM DIPSSGKGDS SNVGVGGASS TVNGVGGAIA PALCRFHGGW GFGNGKGPKF SGNGFSLHSE ELTLQREIDC
301: PRRFNLSPSM KSLLRENVAA FAAGYRASME QKKQVQMQSE TSGTSLSCTA AATHSEKCEQ PHVFGSEECF SSVLEKFRDL NLDDNVDSAP EELKDDALIG
401: LLQQVQDLKK QLKERKDWAQ KKAMQAAQKV SDELSELKSL RSEREEIQRV KKGKQTREDS TLKKLSEMEN ALRKASGQVD KANAVVRALE NESAEIRAEM
501: EASKLSASES LTACMEASKK EKKCLKKLLA WEKQKMKLQD EITAEKEKIK ALNRALAQIT QEEKEYEAKW RQEQKAKEQV LAQVEEEQRS KEAIEASNKR
601: KVESLRLKIE IDFQRHKDDL QRLEQELSRL NKASSTDSSL QSNNTSHTKV KSDKSKGETM SKLLEELNRL DGSYEKEANY DRECLICMKD EVSVVFLPCA
701: HQVVCASCSD SFMGSGKATC PCCRAPVQQR IRVFGASS
Arabidopsis Description
RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q8L7B1]
SUBAcon: [endoplasmic reticulum]
SUBAcon: [endoplasmic reticulum]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.