Factsheet for Zm00001d006317_P002

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
cytosol 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, nucleus, plastid
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER99333	Sorghum	nucleus, plastid	89.95	90.8
Os05t0141500-01	Rice	nucleus, plastid	73.13	72.12
TraesCS1A01G084200.1	Wheat	cytosol	72.9	71.81
HORVU1Hr1G018310.1	Barley	cytosol	72.78	71.53
TraesCS1B01G101700.1	Wheat	cytosol	72.66	71.49
TraesCS1D01G085400.1	Wheat	cytosol	72.55	71.38
Zm00001d021404_P001	Maize	cytosol	87.5	66.22
Solyc10g050590.1.1	Tomato	cytosol	2.57	43.14
Solyc09g074160.1.1	Tomato	cytosol	2.8	40.0
GSMUA_Achr3P23730_001	Banana	nucleus	33.53	39.75
Bra033393.1-P	Field mustard	nucleus	12.03	38.29
GSMUA_Achr2P01510_001	Banana	nucleus	34.35	36.43
CDX91265	Canola	cytosol, mitochondrion, nucleus	10.86	35.5
CDY22093	Canola	nucleus	18.11	35.07
PGSC0003DMT400009741	Potato	nucleus	4.44	33.33
VIT_05s0020g02320.t01	Wine grape	nucleus	33.53	32.25
Solyc08g016350.1.1	Tomato	extracellular	2.69	31.94
KRH02160	Soybean	nucleus	32.48	31.7
KRH11313	Soybean	nucleus, plastid	32.71	31.64
KRH20958	Soybean	nucleus, plastid	32.36	31.37
Solyc01g080430.2.1	Tomato	nucleus	31.19	31.16
PGSC0003DMT400081760	Potato	plastid	32.48	30.85
KRH50955	Soybean	nucleus	31.89	30.67
Bra036227.1-P	Field mustard	plastid	23.71	28.75
AT1G03365.2	Thale cress	nucleus	24.88	25.88
AT4G03000.2	Thale cress	nucleus	24.42	25.68
CDX89896	Canola	nucleus	25.0	25.54
Solyc09g074140.1.1	Tomato	nucleus	16.0	25.14
CDY21932	Canola	nucleus, plastid	23.95	24.94
KRH71485	Soybean	cytosol, endoplasmic reticulum, nucleus	23.71	24.34
Solyc06g008900.2.1	Tomato	nucleus	23.48	23.87
Solyc10g050610.1.1	Tomato	nucleus	8.76	23.58
PGSC0003DMT400009742	Potato	nucleus	21.96	23.21
PGSC0003DMT400074463	Potato	cytosol	11.57	22.6
Solyc09g074150.1.1	Tomato	nucleus	10.51	22.11
Zm00001d020292_P001	Maize	mitochondrion, nucleus	16.47	22.0
Zm00001d005154_P001	Maize	nucleus	20.09	21.86
Solyc09g074200.1.1	Tomato	nucleus	20.21	21.44
Solyc09g074120.1.1	Tomato	nucleus	13.67	21.43
Solyc09g074190.1.1	Tomato	nucleus	20.09	21.42
Solyc09g074130.1.1	Tomato	endoplasmic reticulum	16.36	20.11
Solyc08g016370.1.1	Tomato	cytosol, extracellular, plasma membrane	2.8	20.0
CDY18168	Canola	nucleus	11.8	19.54
Solyc09g074170.1.1	Tomato	cytosol	6.66	17.81

Protein Annotations

EntrezGene:103647645	Gene3D:3.30.40.10	MapMan:35.1	UniProt:A0A1D6EUS2	ncoils:Coil	GO:GO:0003674
GO:GO:0003824	GO:GO:0016874	InterPro:IPR001841	InterPro:IPR013083	ProteinID:ONM23403.1	ProteinID:ONM23405.1
ProteinID:ONM23406.1	PFAM:PF13920	PFscan:PS50089	PANTHER:PTHR10044	PANTHER:PTHR10044:SF143	SUPFAM:SSF57850
UniParc:UPI0004DEB00E	EnsemblPlantsGene:Zm00001d006317	EnsemblPlants:Zm00001d006317_P002	EnsemblPlants:Zm00001d006317_T002	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD
SEG:seg	:	:	:	:	:

Description

Putative E3 ubiquitin-protein ligase RF4

Coordinates

chr2:-:204325597..204331428

Molecular Weight (calculated)

94126.5 Da

IEP (calculated)

6.475

GRAVY (calculated)

-0.602

Length

856 amino acids

Sequence
(BLAST)

001: MSTIATPPPP SAAQEKAASR NKRKYRAETP STELGPFGLE YPLTTDCVGF EFMSPEKVAM AAAVAAAEGV SLDLLQNSCE NCKDLHPTAE DLLECQRYVN
101: WGDPNEMQLE EILLKSLDTT FDNSVSLITT MGYSEAAARA AIMRTAAQYD WRESLAGFGE AAVEVLKTEG DMLPREGASV EDMRKIEEAV LGSMVTLVTE
201: AQPFNTPGDV MYCLLMSDMN VANACAMDYN SFSLPAVSAQ VIAQPVAGNY EPGSGSNLSV SITNPQTGVT FRGKLTPVPP GSYGAIKADS STAQASPNVS
301: NTEPSVSDKT QCVIPNIEPK KHHVPICDHS EDQPFVAAAT QSVKNDKSSP SKRGGSKRDS FHRQKLTNYD KSSRALGSKG SLRSGKQSSS ASAVLERKCR
401: SFSDSTTSNL KGSSRVAKGF AASISGSEVS VDLSFTGTLS PSPSFDAKVV SNSNSAPAAS TDLSLALSSS DSLTPSLSHD SNTEVVDSSS KINFSYDEEQ
501: KVWIPQDKKD EIVLILVQRQ KELQAHTRDW TDWAQQKVMQ VAHRLAKEKD ELQSLRKEKE EADRLQEERH HLEESTRKKL LEMESAISRA NAQLEKAEAS
601: ARRREVENAQ LTLQMEAAKR HAAESATNIS ELVKKDENSR KRSQRWQSDR ALLQEDLAAQ KSRLSRVQEH LQHAKELKDQ VQARWKQEEA GKIEVIALVT
701: SKKKEREQIE TSMRSEENLL HLKAANDTER YKSEIRALEQ RIAQMKVSLD SSKVAAPKWG ADNKTYALHL SEGRKNSSAQ ILSNIAVPQD PSFDDIQRDR
801: ECVMCLSEEM SVVFLPCAHQ VVCAKCSDLH EKQGMKECPS CRTPIQRRVR ARPAGC

Best Arabidopsis Sequence Match ( AT4G03000.1 )
(BLAST)

001: MVEKQEEMNE FGAVNGGKVG TSSSVSPPQD KGRKNKRKLA DPSPQNAASL TEFPRYELHS FKSQSPLCEN DSNGQLKAEE SDSVGWDDPF ACHLEGLLSS
101: NLLTLFRSAM NQIMDCGYSE DVVLKAISSS RFYCGGTDLV SNIVNDTLSF LKSGKKVAGS RDYVFEDLQQ LVAYSLVEKI SLVREVRPSL STDEAMWRLL
201: ICDLNVLKAF EVDADGLEGS SVSNASKSSE SPVAECNPPK SSDADNPKAP VSNTQSKQSE PVKFGNFANV NNSKNPHASG ATPGKEVFSV STASGEGTKS
301: ASLTSVSDEK LVSCRKGRTK KEMAMLRQKS CVEKIRTYSK GGGYKTAKFG GFLVEKRGKS ASDLLSAQAR NSSSKITTEV MKIPLAESSS TLSNSTKSDS
401: PALDVKEHVT ALPANNAPAP VASEKKSGSE PEEKPSVSTK PAPDYYAAIP YDATLGIYIP RNKRDELILK LVPRMKDLQK ELQDWTDWAN QKVKQATVRL
501: LKDQPELKAL RKEKEEAEEF RKEKQLLEEN TIKRRSEMEL ALNNATNQLE RTNNTIRRLE LEQSLLKRER EAANIRASES AESCREAKER VQRLLKNSQS
601: WEGQKNLLQE ELKSQRDKVA GLQQEVAKAK TRQNQIEATW KQEKSATGKL TAQAAALKKE RGKLEELGKA EEERIKTKAE NDVKYYIENI KRLDTEISKL
701: KLKSDSLKIA ALKKGIDGNN DGNKSGMNHT TNTKANSMAS AKVWENNQGA ESKIKREREC VMCLSEEMSV IFLPCAHQVL CSKCNQLHEK EAMEDCPSCR
801: AKIQRRIQAR FARG

Arabidopsis Description

RF298Putative E3 ubiquitin-protein ligase RF298 [Source:UniProtKB/Swiss-Prot;Acc:Q0WPJ7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.