CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, nucleus, cytosol

Predictor Summary:

nucleus 2
cytosol 1
mitochondrion 1
endoplasmic reticulum 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, endoplasmic reticulum, nucleus
Any Predictor:	cytosol, endoplasmic reticulum, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	endoplasmic reticulum
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc09g074160.1.1	Tomato	cytosol	3.96	55.0
Solyc10g050590.1.1	Tomato	cytosol	3.24	52.94
Bra033393.1-P	Field mustard	nucleus	15.23	47.21
CDX91265	Canola	cytosol, mitochondrion, nucleus	14.51	46.18
PGSC0003DMT400009741	Potato	nucleus	6.0	43.86
CDY22093	Canola	nucleus	23.14	43.67
Solyc08g016350.1.1	Tomato	extracellular	3.72	43.06
Bra036227.1-P	Field mustard	plastid	34.05	40.23
AT4G03000.2	Thale cress	nucleus	34.53	35.38
AT1G03365.2	Thale cress	nucleus	34.29	34.75
Solyc06g008900.2.1	Tomato	nucleus	34.65	34.32
CDX89896	Canola	nucleus	34.41	34.25
CDY21932	Canola	nucleus, plastid	32.97	33.45
KRH11313	Soybean	nucleus, plastid	34.17	32.2
KRH20958	Soybean	nucleus, plastid	33.81	31.94
Solyc08g016370.1.1	Tomato	cytosol, extracellular, plasma membrane	4.56	31.67
Solyc09g074140.1.1	Tomato	nucleus	20.38	31.19
PGSC0003DMT400009742	Potato	nucleus	29.98	30.86
Solyc09g074150.1.1	Tomato	nucleus	14.99	30.71
KRH02160	Soybean	nucleus	31.77	30.22
GSMUA_Achr3P09160_001	Banana	nucleus	26.38	29.97
KRH50955	Soybean	nucleus	31.77	29.78
Solyc09g074200.1.1	Tomato	nucleus	28.54	29.49
GSMUA_Achr3P23730_001	Banana	nucleus	25.3	29.22
Solyc10g050610.1.1	Tomato	nucleus	10.91	28.62
PGSC0003DMT400074463	Potato	cytosol	14.99	28.54
Solyc09g074120.1.1	Tomato	nucleus	18.59	28.39
Solyc09g074190.1.1	Tomato	nucleus	26.98	28.02
CDY18168	Canola	nucleus	17.15	27.66
GSMUA_Achr2P01510_001	Banana	nucleus	26.74	27.63
Solyc09g074130.1.1	Tomato	endoplasmic reticulum	20.86	25.0
KRH04325	Soybean	nucleus	19.54	24.01
KRH58212	Soybean	nucleus	20.5	23.85
EER99333	Sorghum	nucleus, plastid	24.22	23.82
Zm00001d006317_P002	Maize	plastid	24.34	23.71
Os05t0141500-01	Rice	nucleus, plastid	23.98	23.04
HORVU1Hr1G018310.1	Barley	cytosol	23.14	22.16
TraesCS1A01G084200.1	Wheat	cytosol	23.02	22.09
TraesCS1B01G101700.1	Wheat	cytosol	23.02	22.07
TraesCS1D01G085400.1	Wheat	cytosol	23.02	22.07
KRH28281	Soybean	nucleus, plastid	17.87	22.01
Solyc09g074170.1.1	Tomato	cytosol	8.39	21.88
OQU88874	Sorghum	nucleus	19.06	20.13
Zm00001d021404_P001	Maize	cytosol	24.82	18.3
Zm00001d005154_P001	Maize	nucleus	17.27	18.3
Os05t0141400-01	Rice	plastid	4.68	17.41

Protein Annotations

EMBL:ACUP02000899	EnsemblPlants:KRH71485	EnsemblPlantsGene:GLYMA_02G150400	EntrezGene:100793172	Gene3D:3.30.40.10	InterPro:IPR001841
InterPro:IPR013083	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	ncoils:Coil	PANTHER:PTHR10044	PANTHER:PTHR10044:SF164
PFAM:PF13920	PFscan:PS50089	ProteinID:KRH71485	ProteinID:KRH71485.1	SEG:seg	SUPFAM:SSF57850
UniParc:UPI0003DE906E	UniProt:A0A0R0KWI5	MapMan:35.1	:	:	:

Description

hypothetical protein

Coordinates

chr2:+:15481050..15485439

Molecular Weight (calculated)

93354.4 Da

IEP (calculated)

7.824

GRAVY (calculated)

-0.597

Length

834 amino acids

Sequence
(BLAST)

001: METMRASDTG NSSFCSQSCG SWPSVIVPEM DKTDDGEDRQ DKGCKNKRKL THPSILPASF PSSLIEFPRY QLPVPQSGLN GFSPSELWAE LFREDEPELY
101: MHELVDWNDP IASQLEELLL SNLQAIFSGA LKRVVELGFD ARLVEMSLSR KALYIEEGDP VSNIVHQTVN VLKGEDDTIT DFIFDNFQHL LHYTMVEMIS
201: VVREVRPSLT VGEAMWLLLI CDLNLSLACA VEDRLSVVCN GENSTSSSSP QSNCSSPTFQ KDLSTNHQNQ KSEEPKFGSF QNSANNQGPH ASGGVKIKAE
301: NASLPITAET SSGTSGIPAH ECKSGPCSKR HNRKEIAALR QRFLHMEKTY RSCGKGSFKS GKVTNVSSLV VEKRLKPPSE IPNQQMKCGS SNMISTKGVR
401: SANVACHVSN NDASVLPAGG KSGTLPAKDT ISTSRMVNAN TSTPGNMSKP KSELSFSVKI LDYCADIPFD EALGKYVPRD EKDRLILKLI TRVQELQNEL
501: HGWNNWTNQK VMQVTNRLGK LQAEFKTLRK EKQDAELLKK DKKIVEENAV KRISEMENAM ENTKKQIESA ASATLVLEAE NSLLKKELDA AKLWVVKSMT
601: SHQQALEREQ MALKQAQILE SQNSLLRDEL EREKHKLFNL QQELHKETNL QAKVEGRLAK ERAAKEKLLA QAASIKKERE QLEQHMKSEE DMARKKAATD
701: LQKYVEDIGK LEKELVDLKL KSDSEKIAAL RRCVDVRNDS FSRTKSAPNM KGNKKSDTSQ TLVSYQDKLA AGSLRREQEC VMCLSEEMSV VFLPCAHQVV
801: CPECNELHEK QGMKECPSCR APIQRRIHAR FARH

Best Arabidopsis Sequence Match ( AT4G03000.1 )
(BLAST)

001: MVEKQEEMNE FGAVNGGKVG TSSSVSPPQD KGRKNKRKLA DPSPQNAASL TEFPRYELHS FKSQSPLCEN DSNGQLKAEE SDSVGWDDPF ACHLEGLLSS
101: NLLTLFRSAM NQIMDCGYSE DVVLKAISSS RFYCGGTDLV SNIVNDTLSF LKSGKKVAGS RDYVFEDLQQ LVAYSLVEKI SLVREVRPSL STDEAMWRLL
201: ICDLNVLKAF EVDADGLEGS SVSNASKSSE SPVAECNPPK SSDADNPKAP VSNTQSKQSE PVKFGNFANV NNSKNPHASG ATPGKEVFSV STASGEGTKS
301: ASLTSVSDEK LVSCRKGRTK KEMAMLRQKS CVEKIRTYSK GGGYKTAKFG GFLVEKRGKS ASDLLSAQAR NSSSKITTEV MKIPLAESSS TLSNSTKSDS
401: PALDVKEHVT ALPANNAPAP VASEKKSGSE PEEKPSVSTK PAPDYYAAIP YDATLGIYIP RNKRDELILK LVPRMKDLQK ELQDWTDWAN QKVKQATVRL
501: LKDQPELKAL RKEKEEAEEF RKEKQLLEEN TIKRRSEMEL ALNNATNQLE RTNNTIRRLE LEQSLLKRER EAANIRASES AESCREAKER VQRLLKNSQS
601: WEGQKNLLQE ELKSQRDKVA GLQQEVAKAK TRQNQIEATW KQEKSATGKL TAQAAALKKE RGKLEELGKA EEERIKTKAE NDVKYYIENI KRLDTEISKL
701: KLKSDSLKIA ALKKGIDGNN DGNKSGMNHT TNTKANSMAS AKVWENNQGA ESKIKREREC VMCLSEEMSV IFLPCAHQVL CSKCNQLHEK EAMEDCPSCR
801: AKIQRRIQAR FARG

Arabidopsis Description

RF298Putative E3 ubiquitin-protein ligase RF298 [Source:UniProtKB/Swiss-Prot;Acc:Q0WPJ7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.