Factsheet for Os05t0141500-01

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 3
plastid 4
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER99333	Sorghum	nucleus, plastid	75.0	76.77
HORVU1Hr1G018310.1	Barley	cytosol	73.5	73.25
TraesCS1B01G101700.1	Wheat	cytosol	73.39	73.22
Zm00001d006317_P002	Maize	plastid	72.12	73.13
TraesCS1A01G084200.1	Wheat	cytosol	73.16	73.07
TraesCS1D01G085400.1	Wheat	cytosol	73.04	72.87
Zm00001d021404_P001	Maize	cytosol	73.27	56.23
Solyc10g050590.1.1	Tomato	cytosol	2.42	41.18
GSMUA_Achr3P23730_001	Banana	nucleus	32.95	39.61
Bra033393.1-P	Field mustard	nucleus	11.98	38.66
Solyc09g074160.1.1	Tomato	cytosol	2.65	38.33
GSMUA_Achr2P01510_001	Banana	nucleus	34.45	37.05
PGSC0003DMT400009741	Potato	nucleus	4.84	36.84
CDX91265	Canola	cytosol, mitochondrion, nucleus	10.83	35.88
CDY22093	Canola	nucleus	17.86	35.07
Solyc01g080430.2.1	Tomato	nucleus	32.37	32.79
PGSC0003DMT400081760	Potato	plastid	33.87	32.63
VIT_05s0020g02320.t01	Wine grape	nucleus	32.49	31.69
KRH20958	Soybean	nucleus, plastid	32.14	31.6
KRH11313	Soybean	nucleus, plastid	31.8	31.19
KRH02160	Soybean	nucleus	30.53	30.22
KRH50955	Soybean	nucleus	30.88	30.11
Bra036227.1-P	Field mustard	plastid	23.96	29.46
Solyc08g016350.1.1	Tomato	extracellular	2.42	29.17
AT1G03365.2	Thale cress	nucleus	24.65	26.0
Solyc09g074140.1.1	Tomato	nucleus	16.24	25.87
AT4G03000.2	Thale cress	nucleus	24.19	25.8
CDY21932	Canola	nucleus, plastid	24.42	25.79
Solyc10g050610.1.1	Tomato	nucleus	9.45	25.79
CDX89896	Canola	nucleus	24.88	25.78
Solyc06g008900.2.1	Tomato	nucleus	23.39	24.11
KRH71485	Soybean	cytosol, endoplasmic reticulum, nucleus	23.04	23.98
PGSC0003DMT400074463	Potato	cytosol	11.98	23.74
PGSC0003DMT400009742	Potato	nucleus	21.43	22.96
Os09t0371700-01	Rice	nucleus	5.53	22.54
Solyc09g074150.1.1	Tomato	nucleus	10.48	22.36
Solyc09g074120.1.1	Tomato	nucleus	13.82	21.98
Solyc09g074190.1.1	Tomato	nucleus	20.05	21.67
Solyc09g074200.1.1	Tomato	nucleus	20.05	21.56
Solyc09g074130.1.1	Tomato	endoplasmic reticulum	16.82	20.98
CDY18168	Canola	nucleus	11.29	18.96
Solyc09g074170.1.1	Tomato	cytosol	6.34	17.19
Solyc08g016370.1.1	Tomato	cytosol, extracellular, plasma membrane	2.19	15.83
Os05t0141400-01	Rice	plastid	3.11	12.05

Protein Annotations

Gene3D:3.30.40.10	MapMan:35.1	EntrezGene:4337764	ProteinID:AAS90643.1	EMBL:AK103601	ProteinID:BAF16519.1
ProteinID:BAS92202.1	ProteinID:BAS92203.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003824	GO:GO:0004842
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006464	GO:GO:0007154
GO:GO:0007165	GO:GO:0008150	GO:GO:0008152	GO:GO:0009966	GO:GO:0009987	GO:GO:0016567
GO:GO:0016740	GO:GO:0019538	InterPro:IPR001841	InterPro:IPR013083	EnsemblPlantsGene:Os05g0141500	EnsemblPlants:Os05t0141500-01
PFAM:PF13920	PFscan:PS50089	PANTHER:PTHR10044	PANTHER:PTHR10044:SF143	UniProt:Q75KG8	SUPFAM:SSF57850
UniParc:UPI00003589B9	RefSeq:XP_015639703.1	RefSeq:XP_015639704.1	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	SEG:seg

Description

Zinc finger, RING-type domain containing protein. (Os05t0141500-01);Hypothetical conserved gene. (Os05t0141500-02)

Coordinates

chr5:-:2382442..2387114

Molecular Weight (calculated)

95310.2 Da

IEP (calculated)

6.349

GRAVY (calculated)

-0.611

Length

868 amino acids

Sequence
(BLAST)

001: MSTLAAHPPL GPAAAAQEKA ASRNKRKYRA EPPSAELGSF GLEYPLTADC VGFEFMSPEK AAIAAAAAAA AVAAEGVNLD LIPGSCDCKD IHPTAEELLE
101: CQRYVNWNDP NEALLEEILL KGLDATFDNA VGVIIAMGYS EPTARAAVLR AATQYNWRES LAGFGEAAVE VLKTEGDMLS EGASEEDMRK IEQAVLGGMI
201: ALVNQAQPFY TTGDVMFCLL MSDMNVANAC AMDYNPASLP AVDTQVIAQP VVGNYEPNNP SSDLSVSITN PQTGVTFRGK LTPVPPNSYN TAKADSSATP
301: ANLNVPSSKP SVSGKAQSEI PNLKPKENSN PVPDHSEEQP FVAAATQPVK DDKPIPSKRG SSKRDSLHRQ KLMSFDKSSR ALGSKGSLRS SKHSSLGSAV
401: LDRKCRSFSD STTSSLKASS KVGKGFSASM KGPEVPPDLS FTGAALPSNP SFDAKLSSNL NPLPAASTDL SLSLPLPSSN DSPAPSSNHD ANTEGMDSSS
501: KINLSYDEDQ KVWIPQDKKD EMVLILVQRQ KELQAHMRDW TDWAQQKVMQ VTRRLAKEKE ELHSLRKEKE EADRLQEERH NLEESTRKKL LEMESAISRA
601: NTQLEKAESS ARRREAENEQ LRIQMEAAKR HALVSATNIL ELSKKDENSH KRSQHWESER ALLQEDLAAQ RNKLSQVHQQ LHHAKEQKDQ IQARWRQEEA
701: GKIEAIARVS LEKKERDQIE TSLRSEENFL HLKAENDTQR YKSQIRALEQ QISQLKVSLD SLRVGAPPKW GADNRTNALR LSEGRKNGSA QILANIAAVP
801: QDFDFDDIQR DRECVMCLSE EMSVVFLPCA HQVVCAKCND LHDKQGMKEC PSCRTPIQRR VCARLAGC

Best Arabidopsis Sequence Match ( AT4G03000.1 )
(BLAST)

001: MVEKQEEMNE FGAVNGGKVG TSSSVSPPQD KGRKNKRKLA DPSPQNAASL TEFPRYELHS FKSQSPLCEN DSNGQLKAEE SDSVGWDDPF ACHLEGLLSS
101: NLLTLFRSAM NQIMDCGYSE DVVLKAISSS RFYCGGTDLV SNIVNDTLSF LKSGKKVAGS RDYVFEDLQQ LVAYSLVEKI SLVREVRPSL STDEAMWRLL
201: ICDLNVLKAF EVDADGLEGS SVSNASKSSE SPVAECNPPK SSDADNPKAP VSNTQSKQSE PVKFGNFANV NNSKNPHASG ATPGKEVFSV STASGEGTKS
301: ASLTSVSDEK LVSCRKGRTK KEMAMLRQKS CVEKIRTYSK GGGYKTAKFG GFLVEKRGKS ASDLLSAQAR NSSSKITTEV MKIPLAESSS TLSNSTKSDS
401: PALDVKEHVT ALPANNAPAP VASEKKSGSE PEEKPSVSTK PAPDYYAAIP YDATLGIYIP RNKRDELILK LVPRMKDLQK ELQDWTDWAN QKVKQATVRL
501: LKDQPELKAL RKEKEEAEEF RKEKQLLEEN TIKRRSEMEL ALNNATNQLE RTNNTIRRLE LEQSLLKRER EAANIRASES AESCREAKER VQRLLKNSQS
601: WEGQKNLLQE ELKSQRDKVA GLQQEVAKAK TRQNQIEATW KQEKSATGKL TAQAAALKKE RGKLEELGKA EEERIKTKAE NDVKYYIENI KRLDTEISKL
701: KLKSDSLKIA ALKKGIDGNN DGNKSGMNHT TNTKANSMAS AKVWENNQGA ESKIKREREC VMCLSEEMSV IFLPCAHQVL CSKCNQLHEK EAMEDCPSCR
801: AKIQRRIQAR FARG

Arabidopsis Description

RF298Putative E3 ubiquitin-protein ligase RF298 [Source:UniProtKB/Swiss-Prot;Acc:Q0WPJ7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.