CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX89896	Canola	nucleus	62.67	38.66
Solyc08g016370.1.1	Tomato	cytosol, extracellular, plasma membrane	8.7	37.5
AT1G03365.2	Thale cress	nucleus	49.52	31.11
CDY21932	Canola	nucleus, plastid	37.91	23.84
Solyc09g074170.1.1	Tomato	cytosol	14.12	22.81
PGSC0003DMT400074463	Potato	cytosol	17.41	20.55
Solyc10g050610.1.1	Tomato	nucleus	11.61	18.87
KRH71485	Soybean	cytosol, endoplasmic reticulum, nucleus	27.66	17.15
Solyc06g008900.2.1	Tomato	nucleus	27.66	16.98
PGSC0003DMT400009742	Potato	nucleus	25.15	16.05
CDY22093	Canola	nucleus	13.54	15.84
GSMUA_Achr3P23730_001	Banana	nucleus	21.86	15.65
GSMUA_Achr3P09160_001	Banana	nucleus	22.05	15.53
Solyc09g074200.1.1	Tomato	nucleus	24.18	15.49
GSMUA_Achr2P01510_001	Banana	nucleus	22.63	14.5
Solyc09g074190.1.1	Tomato	nucleus	21.08	13.57
Solyc09g074150.1.1	Tomato	nucleus	9.86	12.53
EER99333	Sorghum	nucleus, plastid	19.73	12.03
TraesCS1D01G085400.1	Wheat	cytosol	19.92	11.84
TraesCS1B01G101700.1	Wheat	cytosol	19.92	11.84
HORVU1Hr1G018310.1	Barley	cytosol	19.92	11.83
Zm00001d006317_P002	Maize	plastid	19.54	11.8
TraesCS1A01G084200.1	Wheat	cytosol	19.54	11.62
Os05t0141500-01	Rice	nucleus, plastid	18.96	11.29
Solyc09g074130.1.1	Tomato	endoplasmic reticulum	14.89	11.06
Solyc09g074140.1.1	Tomato	nucleus	11.41	10.83
CDX84219	Canola	mitochondrion, nucleus	11.8	10.3
OQU88874	Sorghum	nucleus	15.47	10.13
Zm00001d005154_P001	Maize	nucleus	15.28	10.04
Solyc09g074120.1.1	Tomato	nucleus	10.44	9.89
CDX93827	Canola	cytosol	12.96	9.75
CDY01268	Canola	cytosol	12.57	9.46
Os05t0141400-01	Rice	plastid	4.06	9.38
Zm00001d021404_P001	Maize	cytosol	19.34	8.84
CDY31680	Canola	mitochondrion, nucleus	9.67	8.82
Solyc08g016350.1.1	Tomato	extracellular	0.77	5.56
Solyc10g050590.1.1	Tomato	cytosol	0.0	0.0
Solyc09g074160.1.1	Tomato	cytosol	0.0	0.0
PGSC0003DMT400009741	Potato	nucleus	0.0	0.0
CDX91265	Canola	cytosol, mitochondrion, nucleus	0.0	0.0
Bra033393.1-P	Field mustard	nucleus	0.0	0.0

Protein Annotations

EnsemblPlants:CDY18168	EnsemblPlantsGene:GSBRNA2T00002692001	PANTHER:PTHR10044	PANTHER:PTHR10044:SF141	ProteinID:CDY18168	ProteinID:CDY18168.1
SEG:seg	UniParc:UPI0004EEE9C2	UniProt:A0A078G0M7	MapMan:35.1	:	:

Description

BnaC05g01910DBnaC05g01910D protein [Source:UniProtKB/TrEMBL;Acc:A0A078G0M7]

Coordinates

chrLK032083:+:133843..135513

Molecular Weight (calculated)

56034.3 Da

IEP (calculated)

8.274

GRAVY (calculated)

-0.516

Length

517 amino acids

Sequence
(BLAST)

001: MIRCGRSMVK KQEEMNVCGL SGGDKVGVSS PHQEKGRNNK RKLADPSQDK EASLTEFPRY EDQLKVEESD TIEWDDPFAC RLEELLSSNL LALYLNAMKQ
101: VIDCGYTDDD VLKAISGSRL YCGGSDLVSN IVSNALNVLK NGGEGGDGGS RDYVFEDLQQ LVGYTLVEMI SLVKEVRPSL STVEAMWRLL MCDLNVLQAF
201: EIESSDSPGF SLSEASESLA SESNNPPNSG GPDNQKPQQT NAQSDQSEPL KFGNFPNYKN THSTGTTSGK GVASGSTVSG AGVKSTSFTL VSDEKVVSSR
301: KGRTKKEIPM LRQKSCVEKI RTYSKGSGSY KAAKFASVGS FLLEKRAKSS SELLARNCSS KMTTEIGVKV SLEETSCFVR KKSSKSESPV VVVDGQGYIT
401: ALPAIAATKA SKKKSGSEPI KLVPSASEKK SGSQPAKLVP SASEKKSEKA SVSEKLAPDY YAGIPYDASL GIYIPRDKKD ELILKLVPRV DDLQNELQVW
501: TDWANQKVKE ATGRLLK

Best Arabidopsis Sequence Match ( AT1G03365.2 )
(BLAST)

001: MSIVQKQEEM NGCGLNVDKV EAFTVSPQEK GRKNKRKLAD PSQPNASSLT EFPPYELPSL KPQNHLSGNG SVGEVSNQLQ VEVSESVEWD DPFACHLEEL
101: LSSNLLTLFL DTMKQLIDLG YTDDEVLKAV SRCRLYCGGN NLLSNIVNNT LSALKTGDEG AGSGDYVFED LQQLVSYTLV EMISLIKEVR PSLSTVEAMW
201: RLLMCDLNVL QAFEAEGDGL VSSSKLSDSE SLGAESNPPK SSDPDNPKPP QSDPQSNRNE PLKFGNFPNT PNSKKTQSSG TTPGKEVCSG STVSCQGMRS
301: TSFTLVSDEK LVSCRKGRTK KEIAMLRQKS CVEKIRTYSK GSGYKAAKFA SVGSFLLEKR VKSSSEFVPR NSSSKITAEI GVKVSLAEDS GCFVRKNSKL
401: DSPVVVVDAK GYITALPARS VKSASKKKTG SESVTLIPSA SEKKSDSSIP STSEKKSGSE SEEKASVSAK LAPDYYAGIP YDAALGIYVP RDKKDELILK
501: LVPRVNDLQN ELQVWTDWAN QKVKEATGRL LKDQPELKAL RKEREEAEQY KKEKQLLEEN TRKRLSEMDF ALKNATSQLE KAFNTAHRLE LEQSILKKEM
601: EAAKIKAVES AESFREAKER GERSLKDIHS WEGQKIMLQE ELKGQREKVT VLQKEVTKAK NRQNQIEAAL KQERTAKGKL SAQASLIRKE TKELEALGKV
701: EEERIKGKAE TDVKYYIDNI KRLEREISEL KLKSDYSRII ALKKGSSESK ATKRESLGMP KVKRERECVM CLSEEMSVIF LPCAHQVLCF KCNQLHEKEG
801: MMDCPSCRGT IHRRIQARFA RSG

Arabidopsis Description

RF4Putative E3 ubiquitin-protein ligase RF4 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZVT8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.