Factsheet for Solyc09g074200.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400009742	Potato	nucleus	76.21	75.93
Solyc09g074160.1.1	Tomato	cytosol	5.33	71.67
Solyc09g074190.1.1	Tomato	nucleus	69.02	69.36
Solyc10g050590.1.1	Tomato	cytosol	4.21	66.67
Solyc08g016350.1.1	Tomato	extracellular	5.7	63.89
Solyc08g016370.1.1	Tomato	cytosol, extracellular, plasma membrane	8.8	59.17
Solyc09g074140.1.1	Tomato	nucleus	36.8	54.5
Solyc10g050610.1.1	Tomato	nucleus	21.44	54.4
Solyc09g074150.1.1	Tomato	nucleus	25.65	50.86
Solyc09g074120.1.1	Tomato	nucleus	32.96	48.72
Solyc09g074130.1.1	Tomato	endoplasmic reticulum	39.28	45.55
Solyc06g008900.2.1	Tomato	nucleus	43.74	41.92
Solyc09g074170.1.1	Tomato	cytosol	15.74	39.69
Bra033393.1-P	Field mustard	nucleus	11.4	34.2
CDY22093	Canola	nucleus	18.46	33.71
Bra036227.1-P	Field mustard	plastid	28.38	32.44
CDX91265	Canola	cytosol, mitochondrion, nucleus	10.16	31.3
KRH71485	Soybean	cytosol, endoplasmic reticulum, nucleus	29.49	28.54
AT4G03000.2	Thale cress	nucleus	28.5	28.26
GSMUA_Achr3P09160_001	Banana	nucleus	24.78	27.25
AT1G03365.2	Thale cress	nucleus	27.63	27.1
CDX89896	Canola	nucleus	28.13	27.09
CDY21932	Canola	nucleus, plastid	27.39	26.89
Solyc01g080430.2.1	Tomato	nucleus	27.88	26.25
GSMUA_Achr3P23730_001	Banana	nucleus	23.42	26.18
GSMUA_Achr2P01510_001	Banana	nucleus	25.53	25.53
CDY18168	Canola	nucleus	15.49	24.18
Solyc08g006980.2.1	Tomato	nucleus	20.94	23.34
Solyc08g077100.2.1	Tomato	nucleus	11.9	22.7
TraesCS1A01G084200.1	Wheat	cytosol	22.92	21.29
TraesCS1D01G085400.1	Wheat	cytosol	22.92	21.26
TraesCS1B01G101700.1	Wheat	cytosol	22.92	21.26
HORVU1Hr1G018310.1	Barley	cytosol	22.68	21.01
EER99333	Sorghum	nucleus, plastid	21.44	20.4
Zm00001d006317_P002	Maize	plastid	21.44	20.21
Os05t0141500-01	Rice	nucleus, plastid	21.56	20.05
OQU88874	Sorghum	nucleus	16.85	17.22
Zm00001d005154_P001	Maize	nucleus	15.49	15.88
Zm00001d021404_P001	Maize	cytosol	20.94	14.94
Os05t0141400-01	Rice	plastid	3.72	13.39

Protein Annotations

Gene3D:3.30.40.10	MapMan:35.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003824	GO:GO:0004842
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006464	GO:GO:0007154
GO:GO:0007165	GO:GO:0008150	GO:GO:0008152	GO:GO:0009966	GO:GO:0009987	GO:GO:0016567
GO:GO:0016740	GO:GO:0019538	InterPro:IPR001841	InterPro:IPR013083	UniProt:K4CUZ7	PFAM:PF13920
PFscan:PS50089	PANTHER:PTHR10044	PANTHER:PTHR10044:SF164	SUPFAM:SSF57850	EnsemblPlantsGene:Solyc09g074200.1	EnsemblPlants:Solyc09g074200.1.1
UniParc:UPI000276B37A	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:

Description

No Description!

Coordinates

chr9:+:65974073..65976727

Molecular Weight (calculated)

91089.5 Da

IEP (calculated)

5.480

GRAVY (calculated)

-0.595

Length

807 amino acids

Sequence
(BLAST)

001: MVDDNISDDA NEKSLVVSDK EKESMNKTKF VSELPLGIVT DSPVSCLTEL PKYELLDEAP KGDIIFDIDP LKTECPQLDA EQDVEILADT DWEDMITTEL
101: LKLLTQNLSI IFQSAVKRIV KCGYSEEIAE LVIMRSGIYH GSKDVVSNIV DGALGLLSGE KVFDIGTPVI FEDLQSLVDY TLLEMVCVLR EVKPALPVVQ
201: ALWSLLIFDL NPIHVCKMEG YQLVELCNQE SLGNNSSDLN LPQSNTEAFD NTQSNSDKQQ LSRTITPVAQ TLQSKVPISN TAPQEPEFEN SNVCQAAKGK
301: GSSTFSPEAK LKGPILEGKS EAGKSSLNSK KDLRKRKTFQ FEKNCRSRTS KNIKVNMTAW ERLVSDKNVN LSFTGVPKKN SRSKSTTCIK HNLPLQKASS
401: DSPCHSSSIA SASDTSKVPH MQANVNDKDP DSLSMDLKSS KKALDNTTIS SAVPDYYVDI PYDESLGKYV PQNERDETIL LRIFRLKSLQ KELQGWSDWA
501: NEKVMQATHR LAKDQAELKM LRQEKNDAEK VHREKEMLEK DTTERIMEME LAQVNTNSMS EITNSLLKTL EIDNVKLKKD IEALMLSTSE NPMNVNNVLA
601: KEQEAIKKCQ VAEMEKHSFE KDLSTFKQEK TSLQQKQEKA NKVLDQFKVL LKQEEQEKQR FLQQADSLKA EREQLHVHGK VQRDNFREKV KTNMQKYKQD
701: IQNCESEISQ LRFQFERSKI EALKRGIPQM TKGLAASAET SGSNVLNVER ECVMCMNEQI SVVFLPCAHQ VLCEDCNVHH QNRGMDKCPS CRTPIKERIS
801: AHFPDSE

Best Arabidopsis Sequence Match ( AT4G03000.1 )
(BLAST)

001: MVEKQEEMNE FGAVNGGKVG TSSSVSPPQD KGRKNKRKLA DPSPQNAASL TEFPRYELHS FKSQSPLCEN DSNGQLKAEE SDSVGWDDPF ACHLEGLLSS
101: NLLTLFRSAM NQIMDCGYSE DVVLKAISSS RFYCGGTDLV SNIVNDTLSF LKSGKKVAGS RDYVFEDLQQ LVAYSLVEKI SLVREVRPSL STDEAMWRLL
201: ICDLNVLKAF EVDADGLEGS SVSNASKSSE SPVAECNPPK SSDADNPKAP VSNTQSKQSE PVKFGNFANV NNSKNPHASG ATPGKEVFSV STASGEGTKS
301: ASLTSVSDEK LVSCRKGRTK KEMAMLRQKS CVEKIRTYSK GGGYKTAKFG GFLVEKRGKS ASDLLSAQAR NSSSKITTEV MKIPLAESSS TLSNSTKSDS
401: PALDVKEHVT ALPANNAPAP VASEKKSGSE PEEKPSVSTK PAPDYYAAIP YDATLGIYIP RNKRDELILK LVPRMKDLQK ELQDWTDWAN QKVKQATVRL
501: LKDQPELKAL RKEKEEAEEF RKEKQLLEEN TIKRRSEMEL ALNNATNQLE RTNNTIRRLE LEQSLLKRER EAANIRASES AESCREAKER VQRLLKNSQS
601: WEGQKNLLQE ELKSQRDKVA GLQQEVAKAK TRQNQIEATW KQEKSATGKL TAQAAALKKE RGKLEELGKA EEERIKTKAE NDVKYYIENI KRLDTEISKL
701: KLKSDSLKIA ALKKGIDGNN DGNKSGMNHT TNTKANSMAS AKVWENNQGA ESKIKREREC VMCLSEEMSV IFLPCAHQVL CSKCNQLHEK EAMEDCPSCR
801: AKIQRRIQAR FARG

Arabidopsis Description

RF298Putative E3 ubiquitin-protein ligase RF298 [Source:UniProtKB/Swiss-Prot;Acc:Q0WPJ7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.