CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra033393.1-P	Field mustard	nucleus	31.98	99.63
CDY18168	Canola	nucleus	38.66	62.67
AT1G03365.2	Thale cress	nucleus	61.34	62.45
CDX91265	Canola	cytosol, mitochondrion, nucleus	19.33	61.83
CDY22093	Canola	nucleus	30.91	58.6
Solyc09g074160.1.1	Tomato	cytosol	3.94	55.0
Solyc10g050590.1.1	Tomato	cytosol	3.34	54.9
CDY21932	Canola	nucleus, plastid	46.78	47.69
Solyc08g016350.1.1	Tomato	extracellular	4.06	47.22
PGSC0003DMT400009741	Potato	nucleus	5.97	43.86
Solyc08g016370.1.1	Tomato	cytosol, extracellular, plasma membrane	5.61	39.17
KRH71485	Soybean	cytosol, endoplasmic reticulum, nucleus	34.25	34.41
Solyc06g008900.2.1	Tomato	nucleus	32.34	32.19
GSMUA_Achr3P23730_001	Banana	nucleus	26.85	31.16
Solyc09g074140.1.1	Tomato	nucleus	19.45	29.91
Solyc10g050610.1.1	Tomato	nucleus	11.34	29.87
GSMUA_Achr3P09160_001	Banana	nucleus	26.13	29.84
PGSC0003DMT400009742	Potato	nucleus	28.28	29.26
GSMUA_Achr2P01510_001	Banana	nucleus	27.8	28.87
PGSC0003DMT400074463	Potato	cytosol	14.8	28.31
Solyc09g074200.1.1	Tomato	nucleus	27.09	28.13
Solyc09g074120.1.1	Tomato	nucleus	18.26	28.02
Solyc09g074190.1.1	Tomato	nucleus	26.01	27.15
Solyc09g074150.1.1	Tomato	nucleus	13.13	27.03
Solyc09g074170.1.1	Tomato	cytosol	9.79	25.62
EER99333	Sorghum	nucleus, plastid	25.66	25.35
Solyc09g074130.1.1	Tomato	endoplasmic reticulum	20.88	25.14
Zm00001d006317_P002	Maize	plastid	25.54	25.0
CDX84219	Canola	mitochondrion, nucleus	17.66	25.0
Os05t0141500-01	Rice	nucleus, plastid	25.78	24.88
TraesCS1D01G085400.1	Wheat	cytosol	25.78	24.83
TraesCS1A01G084200.1	Wheat	cytosol	25.66	24.74
TraesCS1B01G101700.1	Wheat	cytosol	25.66	24.71
HORVU1Hr1G018310.1	Barley	cytosol	25.54	24.57
CDY31680	Canola	mitochondrion, nucleus	16.23	23.99
CDX93827	Canola	cytosol	18.74	22.85
CDY01268	Canola	cytosol	18.62	22.71
OQU88874	Sorghum	nucleus	18.14	19.24
Zm00001d005154_P001	Maize	nucleus	18.02	19.19
Zm00001d021404_P001	Maize	cytosol	25.66	19.01
Os05t0141400-01	Rice	plastid	3.58	13.39

Protein Annotations

EnsemblPlants:CDX89896	EnsemblPlantsGene:GSBRNA2T00150376001	Gene3D:3.30.40.10	GO:A0A078DKW9	InterPro:IPR001841	InterPro:IPR013083
InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	ncoils:Coil	PANTHER:PTHR10044	PANTHER:PTHR10044:SF141	PFAM:PF13920
PFscan:PS50089	ProteinID:CDX89896	ProteinID:CDX89896.1	SEG:seg	SUPFAM:SSF57850	UniParc:UPI0004EECB42
MapMan:35.1	:	:	:	:	:

Description

BnaA10g01860D

Coordinates

chrLK031861:-:683663..686837

Molecular Weight (calculated)

92710.6 Da

IEP (calculated)

9.472

GRAVY (calculated)

-0.706

Length

838 amino acids

Sequence
(BLAST)

001: MVKKQEEMNV CDKVGVSPHQ EKGRNNKRKL ADPSQDKEAS LTEFPRYEDQ LKLEESDDTV EWDDPFACRL EELLSSNLLA LFLNAMKQVI DCGYTDDDVL
101: KAISGSRLYC GGSDLVSNIV SNALNVLKNG GEGGGEGSRD YVFEDLQQLV GYTLVEMISL VKEVRPSLST VEAMWRLLMC DLNVLQAFEL ESSDSPGFSL
201: SEASESLAAE SNNPPNSGDP DNQKPQQTNA QSDQSEPLKF GNFPNYKSTH SSGTASGKGV ASGSTVSGAG VKSTSFTLVS DEKVVSSRKG RTKKEIPMLR
301: QKSCVEKIRT YGKGSGSYKA AKFASVGSFL LEKRAKSSSE LLARNCSSKM TTEIGVKVSL EETSCFVRKK SSKSESPVVV VDGQGYITAL PAIAATKASK
401: KKSGSEPIKL VPSASDKKSG SQPAKLVPSA SEKKSGSQPP VKLVPSASEK KSVSSVKSVP SVPIASGKKS CSESEEKASV SEKLAPDYYA GIPYDASLGI
501: YIPRDKKDEL ILKLVPRVDD LQNELQVWTD WANQKVKEAT GRLLKDQPEL KALRKERELA KQHKKEKQLM EENTMKRLSE MEIAVKNATS QFEKANNTAR
601: RLEVEQSSLK KEMEAAKMRA AESAESYREA KERGQRSFKD SQSWEGQKAM LQEELKVQRD KVTVMQKEVN KAKNRQNQIE VTLKQEKTAK GKLTAQACAI
701: KKERKKLEAL GKAEEERIKA KAEADMKYYI DNIKRLERDI TELKLKSEYS RIMALKKGGG GNEPKPRKRE NHGVAKVKRE RECVMCLSEE MSVIFLPCAH
801: QVLCFTCNQL HEKEGMKDCP SCRGTIQRRI QARFARTG

Best Arabidopsis Sequence Match ( AT1G03365.2 )
(BLAST)

001: MSIVQKQEEM NGCGLNVDKV EAFTVSPQEK GRKNKRKLAD PSQPNASSLT EFPPYELPSL KPQNHLSGNG SVGEVSNQLQ VEVSESVEWD DPFACHLEEL
101: LSSNLLTLFL DTMKQLIDLG YTDDEVLKAV SRCRLYCGGN NLLSNIVNNT LSALKTGDEG AGSGDYVFED LQQLVSYTLV EMISLIKEVR PSLSTVEAMW
201: RLLMCDLNVL QAFEAEGDGL VSSSKLSDSE SLGAESNPPK SSDPDNPKPP QSDPQSNRNE PLKFGNFPNT PNSKKTQSSG TTPGKEVCSG STVSCQGMRS
301: TSFTLVSDEK LVSCRKGRTK KEIAMLRQKS CVEKIRTYSK GSGYKAAKFA SVGSFLLEKR VKSSSEFVPR NSSSKITAEI GVKVSLAEDS GCFVRKNSKL
401: DSPVVVVDAK GYITALPARS VKSASKKKTG SESVTLIPSA SEKKSDSSIP STSEKKSGSE SEEKASVSAK LAPDYYAGIP YDAALGIYVP RDKKDELILK
501: LVPRVNDLQN ELQVWTDWAN QKVKEATGRL LKDQPELKAL RKEREEAEQY KKEKQLLEEN TRKRLSEMDF ALKNATSQLE KAFNTAHRLE LEQSILKKEM
601: EAAKIKAVES AESFREAKER GERSLKDIHS WEGQKIMLQE ELKGQREKVT VLQKEVTKAK NRQNQIEAAL KQERTAKGKL SAQASLIRKE TKELEALGKV
701: EEERIKGKAE TDVKYYIDNI KRLEREISEL KLKSDYSRII ALKKGSSESK ATKRESLGMP KVKRERECVM CLSEEMSVIF LPCAHQVLCF KCNQLHEKEG
801: MMDCPSCRGT IHRRIQARFA RSG

Arabidopsis Description

RF4Putative E3 ubiquitin-protein ligase RF4 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZVT8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.