Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra005352.1-P | Field mustard | nucleus | 52.91 | 97.4 |
| CDX84219 | Canola | mitochondrion, nucleus | 91.01 | 87.16 |
| AT2G35330.1 | Thale cress | endoplasmic reticulum | 73.72 | 56.64 |
| CDX93827 | Canola | cytosol | 58.73 | 48.47 |
| CDY01268 | Canola | cytosol | 58.02 | 47.89 |
| KRH04325 | Soybean | nucleus | 55.2 | 46.1 |
| KRH58212 | Soybean | nucleus | 55.91 | 44.21 |
| VIT_02s0012g01020.t01 | Wine grape | nucleus | 55.03 | 43.15 |
| KRH28281 | Soybean | nucleus, plastid | 46.91 | 39.29 |
| PGSC0003DMT400052886 | Potato | nucleus | 49.38 | 38.73 |
| GSMUA_Achr1P24020_001 | Banana | mitochondrion, nucleus | 45.68 | 38.54 |
| Solyc08g077100.2.1 | Tomato | nucleus | 28.4 | 38.06 |
| Solyc08g006980.2.1 | Tomato | nucleus | 47.27 | 37.02 |
| GSMUA_Achr7P04700_001 | Banana | mitochondrion, nucleus | 43.56 | 36.48 |
| Os09t0371700-01 | Rice | nucleus | 13.05 | 34.74 |
| KXG35515 | Sorghum | mitochondrion | 34.74 | 30.59 |
| TraesCS5D01G202000.1 | Wheat | mitochondrion | 35.1 | 30.2 |
| TraesCS5B01G194700.1 | Wheat | mitochondrion | 34.92 | 30.05 |
| TraesCS5A01G189000.1 | Wheat | mitochondrion | 34.92 | 30.05 |
| Zm00001d020292_P001 | Maize | mitochondrion, nucleus | 33.69 | 29.8 |
| CDX91265 | Canola | cytosol, mitochondrion, nucleus | 13.05 | 28.24 |
| HORVU5Hr1G058760.1 | Barley | plastid | 34.22 | 26.76 |
| CDY22093 | Canola | nucleus | 19.4 | 24.89 |
| OQU93157 | Sorghum | plastid | 8.64 | 22.37 |
| CDY21932 | Canola | nucleus, plastid | 26.45 | 18.25 |
| CDX89896 | Canola | nucleus | 23.99 | 16.23 |
| CDY18168 | Canola | nucleus | 8.82 | 9.67 |
Protein Annotations
| EnsemblPlants:CDY31680 | EnsemblPlantsGene:GSBRNA2T00050292001 | Gene3D:3.30.40.10 | GO:A0A078GYZ8 | InterPro:IPR001841 | InterPro:IPR013083 |
| InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | ncoils:Coil | PANTHER:PTHR10044 | PANTHER:PTHR10044:SF133 | PFAM:PF13920 |
| PFscan:PS50089 | ProteinID:CDY31680 | ProteinID:CDY31680.1 | SEG:seg | SUPFAM:SSF57850 | UniParc:UPI0004EEC92B |
| UniProt:A0A078GYZ8 | MapMan:35.1 | : | : | : | : |
Description
BnaA05g08670DBnaA05g08670D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GYZ8]
Coordinates
chrLK032277:+:270296..272576
Molecular Weight (calculated)
64506.3 Da
IEP (calculated)
5.293
GRAVY (calculated)
-0.719
Length
567 amino acids
Sequence
(BLAST)
(BLAST)
001: MGCTVRSKHV RPNRKTRSTK PQFDPSCLLN KTALSTLLDS NPSGNFEDNG YGYCTEEQLE DLLLKHLEHI YNEAVSKLVS LGYDDDVALR AVLSNGYCYG
101: GTDVLNNILD NSLAHLKGSS NGEEDEDGSE PVFADLRQLV EYSLAVSFMS VRRVRLIYQP LERWMVIDCP RRFNLTPSMK CLLRENVAAF AAGYRASKKC
201: EQPPQESVSS VLEKFQDLNL DDDSAPEKGK DDALIGLLRQ VQDLKRQVEE RREWAQKKAM QAAQKVSDEL SELQSLRSVR DENLRLKKGK QSGEDSTVKR
301: ISEMESDLRK VSSHVDKAGM IARRLENENA VIRAEIEASK LSESESLTAC IEATKKEKKR LKRLVAWEKQ KKKLQEEIDG EKEKIKALES GLAQIIHEGK
401: EYEEKWREEQ EAKEQALAQV EEEQRSKEAT EVRNKRNVES LRLKIEIDFQ RHKDDLQRLE QELSRLNKDS STDASLQSNN ISQTKGEVVF KLLEELERLD
501: GLYEKEESYD RECLICMKEE VSVVFLPCAH QVVCASCSDS FMGGDKATCP CCRASVQERI RVFGATS
101: GTDVLNNILD NSLAHLKGSS NGEEDEDGSE PVFADLRQLV EYSLAVSFMS VRRVRLIYQP LERWMVIDCP RRFNLTPSMK CLLRENVAAF AAGYRASKKC
201: EQPPQESVSS VLEKFQDLNL DDDSAPEKGK DDALIGLLRQ VQDLKRQVEE RREWAQKKAM QAAQKVSDEL SELQSLRSVR DENLRLKKGK QSGEDSTVKR
301: ISEMESDLRK VSSHVDKAGM IARRLENENA VIRAEIEASK LSESESLTAC IEATKKEKKR LKRLVAWEKQ KKKLQEEIDG EKEKIKALES GLAQIIHEGK
401: EYEEKWREEQ EAKEQALAQV EEEQRSKEAT EVRNKRNVES LRLKIEIDFQ RHKDDLQRLE QELSRLNKDS STDASLQSNN ISQTKGEVVF KLLEELERLD
501: GLYEKEESYD RECLICMKEE VSVVFLPCAH QVVCASCSDS FMGGDKATCP CCRASVQERI RVFGATS
001: MIFTLSISVE FFFSFRFSYI HRRALTLMGC TVREKHVRPN RKTRSVKPEF DPCCLLDRTA LSKSIVESSL KHLVYHPGLL DSCPESNPSG SFEDNNGWGY
101: CTEEQLEDIL LKHLEYLYNE AISKLVGSGY DEDVALRAVL SNGYCYGGMD VMTNILHNSL AYLKSNTGEG SNVNNEDQSE TVFTDLRQLE EYSLAGMVYL
201: LQQVKPNLSK GDAMWCLLMS ELHVGRASTM DIPSSGKGDS SNVGVGGASS TVNGVGGAIA PALCRFHGGW GFGNGKGPKF SGNGFSLHSE ELTLQREIDC
301: PRRFNLSPSM KSLLRENVAA FAAGYRASME QKKQVQMQSE TSGTSLSCTA AATHSEKCEQ PHVFGSEECF SSVLEKFRDL NLDDNVDSAP EELKDDALIG
401: LLQQVQDLKK QLKERKDWAQ KKAMQAAQKV SDELSELKSL RSEREEIQRV KKGKQTREDS TLKKLSEMEN ALRKASGQVD KANAVVRALE NESAEIRAEM
501: EASKLSASES LTACMEASKK EKKCLKKLLA WEKQKMKLQD EITAEKEKIK ALNRALAQIT QEEKEYEAKW RQEQKAKEQV LAQVEEEQRS KEAIEASNKR
601: KVESLRLKIE IDFQRHKDDL QRLEQELSRL NKASSTDSSL QSNNTSHTKV KSDKSKGETM SKLLEELNRL DGSYEKEANY DRECLICMKD EVSVVFLPCA
701: HQVVCASCSD SFMGSGKATC PCCRAPVQQR IRVFGASS
101: CTEEQLEDIL LKHLEYLYNE AISKLVGSGY DEDVALRAVL SNGYCYGGMD VMTNILHNSL AYLKSNTGEG SNVNNEDQSE TVFTDLRQLE EYSLAGMVYL
201: LQQVKPNLSK GDAMWCLLMS ELHVGRASTM DIPSSGKGDS SNVGVGGASS TVNGVGGAIA PALCRFHGGW GFGNGKGPKF SGNGFSLHSE ELTLQREIDC
301: PRRFNLSPSM KSLLRENVAA FAAGYRASME QKKQVQMQSE TSGTSLSCTA AATHSEKCEQ PHVFGSEECF SSVLEKFRDL NLDDNVDSAP EELKDDALIG
401: LLQQVQDLKK QLKERKDWAQ KKAMQAAQKV SDELSELKSL RSEREEIQRV KKGKQTREDS TLKKLSEMEN ALRKASGQVD KANAVVRALE NESAEIRAEM
501: EASKLSASES LTACMEASKK EKKCLKKLLA WEKQKMKLQD EITAEKEKIK ALNRALAQIT QEEKEYEAKW RQEQKAKEQV LAQVEEEQRS KEAIEASNKR
601: KVESLRLKIE IDFQRHKDDL QRLEQELSRL NKASSTDSSL QSNNTSHTKV KSDKSKGETM SKLLEELNRL DGSYEKEANY DRECLICMKD EVSVVFLPCA
701: HQVVCASCSD SFMGSGKATC PCCRAPVQQR IRVFGASS
Arabidopsis Description
RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q8L7B1]
SUBAcon: [endoplasmic reticulum]
SUBAcon: [endoplasmic reticulum]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.