Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY31680 | Canola | mitochondrion, nucleus | 87.16 | 91.01 |
| AT2G35330.1 | Thale cress | endoplasmic reticulum | 76.86 | 61.65 |
| CDX93827 | Canola | cytosol | 62.33 | 53.71 |
| CDY01268 | Canola | cytosol | 61.66 | 53.13 |
| KRH04325 | Soybean | nucleus | 57.26 | 49.93 |
| KRH58212 | Soybean | nucleus | 57.77 | 47.7 |
| VIT_02s0012g01020.t01 | Wine grape | nucleus | 56.93 | 46.61 |
| KRH28281 | Soybean | nucleus, plastid | 49.66 | 43.43 |
| GSMUA_Achr1P24020_001 | Banana | mitochondrion, nucleus | 47.8 | 42.11 |
| PGSC0003DMT400052886 | Potato | nucleus | 51.35 | 42.05 |
| GSMUA_Achr7P04700_001 | Banana | mitochondrion, nucleus | 47.13 | 41.21 |
| Solyc08g006980.2.1 | Tomato | nucleus | 49.49 | 40.47 |
| Solyc08g077100.2.1 | Tomato | nucleus | 27.53 | 38.53 |
| Os09t0371700-01 | Rice | nucleus | 12.33 | 34.27 |
| KXG35515 | Sorghum | mitochondrion | 35.47 | 32.61 |
| TraesCS5A01G189000.1 | Wheat | mitochondrion | 35.64 | 32.02 |
| Zm00001d020292_P001 | Maize | mitochondrion, nucleus | 34.63 | 31.98 |
| TraesCS5B01G194700.1 | Wheat | mitochondrion | 35.47 | 31.87 |
| TraesCS5D01G202000.1 | Wheat | mitochondrion | 35.47 | 31.87 |
| OQU93157 | Sorghum | plastid | 10.64 | 28.77 |
| HORVU5Hr1G058760.1 | Barley | plastid | 34.8 | 28.41 |
| CDX91265 | Canola | cytosol, mitochondrion, nucleus | 12.16 | 27.48 |
| CDY22093 | Canola | nucleus | 18.75 | 25.11 |
| CDY21932 | Canola | nucleus, plastid | 26.86 | 19.34 |
| CDX89896 | Canola | nucleus | 25.0 | 17.66 |
| CDY18168 | Canola | nucleus | 10.3 | 11.8 |
Protein Annotations
| EnsemblPlants:CDX84219 | EnsemblPlantsGene:GSBRNA2T00141272001 | Gene3D:3.30.40.10 | GO:A0A078D770 | InterPro:IPR001841 | InterPro:IPR013083 |
| InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | ncoils:Coil | PANTHER:PTHR10044 | PANTHER:PTHR10044:SF133 | PFAM:PF13920 |
| PFscan:PS50089 | ProteinID:CDX84219 | ProteinID:CDX84219.1 | SEG:seg | SUPFAM:SSF57850 | UniParc:UPI0004EF2AFD |
| MapMan:35.1 | : | : | : | : | : |
Description
BnaC04g09810D
Coordinates
chrLK031836:-:798369..800460
Molecular Weight (calculated)
66741.1 Da
IEP (calculated)
5.396
GRAVY (calculated)
-0.732
Length
592 amino acids
Sequence
(BLAST)
(BLAST)
001: MGCTVRSKHV RPNRKTRSTK PQFDPSCLLN KTALSSLLDS NPSGNFEDSG YGYCTEEQLE DLLLKHLEHI YNEAVSKLVS LGYDEEAALR AVLSNGYCYG
101: GTDVLNNILD NSLTHLKGSS NGEEDEDGSK TVFADLRQLV EYSLAGMVYL LKQVKPNLSK GDAMCCLLMS ELDVGKASTI DIPTSGKVDG DGDCPRRFNL
201: TPSMKCLLRE NVAAFAAGYR ASKKCEQPPQ ESVSSVLEKF QDLNLDDDSA PEKGKDDALI GLLRQVQDLK RQVKERREWA QKKAMQAAQK VSDELAELQS
301: LRSEREENLR LKKGKQSGEE STVKRISEME SDLRKVSSHV DKAGMIARRL ENENAVIRAE IEASKLSESE SLTACIEATK KEKKRLKRLV AWEKQKKKLQ
401: GEIDGEKEKI KALERGLAQI KQEEKEYEEK WREEEKAKEQ ALAQVEEEQR SKEATEVRNK RNVESLRLKI EIDFQRHKDD LQRLEQELSR LNKDSSTDAS
501: LLSNNISQTK GEEVSKLLEE LDRLDGLYEK EESYDRECLI CMKDEVSVVF LPCAHQVVCV SCSESFMGGD KATCPCCRVP VQQRIRVFGA TS
101: GTDVLNNILD NSLTHLKGSS NGEEDEDGSK TVFADLRQLV EYSLAGMVYL LKQVKPNLSK GDAMCCLLMS ELDVGKASTI DIPTSGKVDG DGDCPRRFNL
201: TPSMKCLLRE NVAAFAAGYR ASKKCEQPPQ ESVSSVLEKF QDLNLDDDSA PEKGKDDALI GLLRQVQDLK RQVKERREWA QKKAMQAAQK VSDELAELQS
301: LRSEREENLR LKKGKQSGEE STVKRISEME SDLRKVSSHV DKAGMIARRL ENENAVIRAE IEASKLSESE SLTACIEATK KEKKRLKRLV AWEKQKKKLQ
401: GEIDGEKEKI KALERGLAQI KQEEKEYEEK WREEEKAKEQ ALAQVEEEQR SKEATEVRNK RNVESLRLKI EIDFQRHKDD LQRLEQELSR LNKDSSTDAS
501: LLSNNISQTK GEEVSKLLEE LDRLDGLYEK EESYDRECLI CMKDEVSVVF LPCAHQVVCV SCSESFMGGD KATCPCCRVP VQQRIRVFGA TS
001: MIFTLSISVE FFFSFRFSYI HRRALTLMGC TVREKHVRPN RKTRSVKPEF DPCCLLDRTA LSKSIVESSL KHLVYHPGLL DSCPESNPSG SFEDNNGWGY
101: CTEEQLEDIL LKHLEYLYNE AISKLVGSGY DEDVALRAVL SNGYCYGGMD VMTNILHNSL AYLKSNTGEG SNVNNEDQSE TVFTDLRQLE EYSLAGMVYL
201: LQQVKPNLSK GDAMWCLLMS ELHVGRASTM DIPSSGKGDS SNVGVGGASS TVNGVGGAIA PALCRFHGGW GFGNGKGPKF SGNGFSLHSE ELTLQREIDC
301: PRRFNLSPSM KSLLRENVAA FAAGYRASME QKKQVQMQSE TSGTSLSCTA AATHSEKCEQ PHVFGSEECF SSVLEKFRDL NLDDNVDSAP EELKDDALIG
401: LLQQVQDLKK QLKERKDWAQ KKAMQAAQKV SDELSELKSL RSEREEIQRV KKGKQTREDS TLKKLSEMEN ALRKASGQVD KANAVVRALE NESAEIRAEM
501: EASKLSASES LTACMEASKK EKKCLKKLLA WEKQKMKLQD EITAEKEKIK ALNRALAQIT QEEKEYEAKW RQEQKAKEQV LAQVEEEQRS KEAIEASNKR
601: KVESLRLKIE IDFQRHKDDL QRLEQELSRL NKASSTDSSL QSNNTSHTKV KSDKSKGETM SKLLEELNRL DGSYEKEANY DRECLICMKD EVSVVFLPCA
701: HQVVCASCSD SFMGSGKATC PCCRAPVQQR IRVFGASS
101: CTEEQLEDIL LKHLEYLYNE AISKLVGSGY DEDVALRAVL SNGYCYGGMD VMTNILHNSL AYLKSNTGEG SNVNNEDQSE TVFTDLRQLE EYSLAGMVYL
201: LQQVKPNLSK GDAMWCLLMS ELHVGRASTM DIPSSGKGDS SNVGVGGASS TVNGVGGAIA PALCRFHGGW GFGNGKGPKF SGNGFSLHSE ELTLQREIDC
301: PRRFNLSPSM KSLLRENVAA FAAGYRASME QKKQVQMQSE TSGTSLSCTA AATHSEKCEQ PHVFGSEECF SSVLEKFRDL NLDDNVDSAP EELKDDALIG
401: LLQQVQDLKK QLKERKDWAQ KKAMQAAQKV SDELSELKSL RSEREEIQRV KKGKQTREDS TLKKLSEMEN ALRKASGQVD KANAVVRALE NESAEIRAEM
501: EASKLSASES LTACMEASKK EKKCLKKLLA WEKQKMKLQD EITAEKEKIK ALNRALAQIT QEEKEYEAKW RQEQKAKEQV LAQVEEEQRS KEAIEASNKR
601: KVESLRLKIE IDFQRHKDDL QRLEQELSRL NKASSTDSSL QSNNTSHTKV KSDKSKGETM SKLLEELNRL DGSYEKEANY DRECLICMKD EVSVVFLPCA
701: HQVVCASCSD SFMGSGKATC PCCRAPVQQR IRVFGASS
Arabidopsis Description
RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q8L7B1]
SUBAcon: [endoplasmic reticulum]
SUBAcon: [endoplasmic reticulum]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.