CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 4
plastid 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus, plastid
Any Predictor:	nucleus, plastid
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d006317_P002	Maize	plastid	90.8	89.95
HORVU1Hr1G018310.1	Barley	cytosol	77.24	75.2
Os05t0141500-01	Rice	nucleus, plastid	76.77	75.0
TraesCS1A01G084200.1	Wheat	cytosol	76.77	74.91
TraesCS1B01G101700.1	Wheat	cytosol	76.77	74.83
TraesCS1D01G085400.1	Wheat	cytosol	76.65	74.71
Zm00001d021404_P001	Maize	cytosol	91.98	68.97
Solyc10g050590.1.1	Tomato	cytosol	2.48	41.18
GSMUA_Achr3P23730_001	Banana	nucleus	35.02	41.14
Solyc09g074160.1.1	Tomato	cytosol	2.83	40.0
Bra033393.1-P	Field mustard	nucleus	12.26	38.66
GSMUA_Achr2P01510_001	Banana	nucleus	35.5	37.3
CDX91265	Canola	cytosol, mitochondrion, nucleus	11.32	36.64
CDY22093	Canola	nucleus	18.75	35.97
PGSC0003DMT400009741	Potato	nucleus	4.72	35.09
VIT_05s0020g02320.t01	Wine grape	nucleus	34.55	32.92
KRH20958	Soybean	nucleus, plastid	33.73	32.39
KRH11313	Soybean	nucleus, plastid	33.49	32.09
Solyc01g080430.2.1	Tomato	nucleus	32.43	32.09
Solyc08g016350.1.1	Tomato	extracellular	2.71	31.94
KRH02160	Soybean	nucleus	33.02	31.93
PGSC0003DMT400081760	Potato	plastid	33.84	31.85
KRH50955	Soybean	nucleus	32.55	31.01
Bra036227.1-P	Field mustard	plastid	24.53	29.46
AT1G03365.2	Thale cress	nucleus	25.83	26.61
AT4G03000.2	Thale cress	nucleus	25.12	26.17
CDY21932	Canola	nucleus, plastid	25.12	25.91
CDX89896	Canola	nucleus	25.35	25.66
Solyc09g074140.1.1	Tomato	nucleus	16.27	25.32
KRH71485	Soybean	cytosol, endoplasmic reticulum, nucleus	23.82	24.22
Solyc10g050610.1.1	Tomato	nucleus	9.08	24.21
Solyc06g008900.2.1	Tomato	nucleus	23.94	24.11
PGSC0003DMT400009742	Potato	nucleus	22.17	23.21
KXG35515	Sorghum	mitochondrion	17.57	23.14
PGSC0003DMT400074463	Potato	cytosol	11.91	23.06
Solyc09g074150.1.1	Tomato	nucleus	10.97	22.85
Solyc09g074120.1.1	Tomato	nucleus	14.27	22.16
Solyc09g074200.1.1	Tomato	nucleus	20.4	21.44
OQU88874	Sorghum	nucleus	19.93	21.39
Solyc09g074190.1.1	Tomato	nucleus	20.05	21.17
Solyc09g074130.1.1	Tomato	endoplasmic reticulum	16.86	20.55
CDY18168	Canola	nucleus	12.03	19.73
Solyc08g016370.1.1	Tomato	cytosol, extracellular, plasma membrane	2.59	18.33
OQU93157	Sorghum	plastid	4.72	18.26
Solyc09g074170.1.1	Tomato	cytosol	6.72	17.81

Protein Annotations

Gene3D:3.30.40.10	MapMan:35.1	EntrezGene:8077241	UniProt:C5X7R8	ncoils:Coil	EnsemblPlants:EER99333
ProteinID:EER99333	ProteinID:EER99333.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0004842	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006464	GO:GO:0007154	GO:GO:0007165
GO:GO:0008150	GO:GO:0008152	GO:GO:0009966	GO:GO:0009987	GO:GO:0016567	GO:GO:0016740
GO:GO:0019538	InterPro:IPR001841	InterPro:IPR013083	PFAM:PF13920	PFscan:PS50089	PANTHER:PTHR10044
PANTHER:PTHR10044:SF143	EnsemblPlantsGene:SORBI_3002G292900	SUPFAM:SSF57850	unigene:Sbi.9170	UniParc:UPI0001A83E97	RefSeq:XP_002462812.1
InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr2:-:67048096..67052887

Molecular Weight (calculated)

92974.1 Da

IEP (calculated)

6.434

GRAVY (calculated)

-0.579

Length

848 amino acids

Sequence
(BLAST)

001: MSTVATPPPP SAAQEKAASR NKRKYRAEPP SAELGPFGLE YPLTADCVGF EFMSPEKAAA AAEGVSLDLL QNSCENCKDV HPTAEELLEC QRYVNWSDPN
101: ETQLEEILLK SLDTTFDNAV SLITTMGYSE AAARAAVVRT AAQYNWRESL AGFGEAAVEV LKTEGDMLPR EGASVEDMRK IEQAVLGSMV ALVNEAQPFY
201: TTGDVMFCLL MSDMNVANAC AMDYSTSSLP AVAAQVIAQP VAGNYEPGSG SNLSVSITNP QTGVTFRGKL TPVPPGSYGA VKADSSMAPA SLNVSSSKPS
301: VSGKTQCVIP NIETKEHPVS TRDHSEDQPF VAAATQSLKN DKPSPSKRGG SKRDSLHRQK LTSFDKSSRA LGSKGSLRSG KHSSSASAVL ERKCRSFSDS
401: TSSNLKGSSR VAKGFAASIS GSEVSVDLSF TGTLSPSPSF DAKVVSNSNP APAASTDLSL SLPSSSDSLN HDSNTEGVDS SSKINFSYDE EQKVWIPQDK
501: KDAIVLILVQ RQKDLQAHMH DWTDWAQQKV MQVAHRLAKE KDELQSLRKE KEEADRLQEE RHHLEESTRK KLLEMESAIS RANAQLEKAE ASARRREVEN
601: AQLTLQMEAA KRHAAESATN ISELLKKDEN SRKRSQRWES DRALLQEDLA AQKSKLSRVQ EQLQHAKELK DQVQARWKQE EAGKVEAIAL VTSERKEREQ
701: IETSMRSEEN LLHLKAANDA QRYKSEIRAL EQHIAQLKVS LDSLKVAAPK WGTDNKTYAL HLSEGRKNSN AQILSNIAVP QDLDFDDIQR DRECVMCLSE
801: EMSVVFLPCA HQVVCVKCSD LHEKQGMKEC PSCRTPIQRR VCARPAGF

Best Arabidopsis Sequence Match ( AT4G03000.1 )
(BLAST)

001: MVEKQEEMNE FGAVNGGKVG TSSSVSPPQD KGRKNKRKLA DPSPQNAASL TEFPRYELHS FKSQSPLCEN DSNGQLKAEE SDSVGWDDPF ACHLEGLLSS
101: NLLTLFRSAM NQIMDCGYSE DVVLKAISSS RFYCGGTDLV SNIVNDTLSF LKSGKKVAGS RDYVFEDLQQ LVAYSLVEKI SLVREVRPSL STDEAMWRLL
201: ICDLNVLKAF EVDADGLEGS SVSNASKSSE SPVAECNPPK SSDADNPKAP VSNTQSKQSE PVKFGNFANV NNSKNPHASG ATPGKEVFSV STASGEGTKS
301: ASLTSVSDEK LVSCRKGRTK KEMAMLRQKS CVEKIRTYSK GGGYKTAKFG GFLVEKRGKS ASDLLSAQAR NSSSKITTEV MKIPLAESSS TLSNSTKSDS
401: PALDVKEHVT ALPANNAPAP VASEKKSGSE PEEKPSVSTK PAPDYYAAIP YDATLGIYIP RNKRDELILK LVPRMKDLQK ELQDWTDWAN QKVKQATVRL
501: LKDQPELKAL RKEKEEAEEF RKEKQLLEEN TIKRRSEMEL ALNNATNQLE RTNNTIRRLE LEQSLLKRER EAANIRASES AESCREAKER VQRLLKNSQS
601: WEGQKNLLQE ELKSQRDKVA GLQQEVAKAK TRQNQIEATW KQEKSATGKL TAQAAALKKE RGKLEELGKA EEERIKTKAE NDVKYYIENI KRLDTEISKL
701: KLKSDSLKIA ALKKGIDGNN DGNKSGMNHT TNTKANSMAS AKVWENNQGA ESKIKREREC VMCLSEEMSV IFLPCAHQVL CSKCNQLHEK EAMEDCPSCR
801: AKIQRRIQAR FARG

Arabidopsis Description

RF298Putative E3 ubiquitin-protein ligase RF298 [Source:UniProtKB/Swiss-Prot;Acc:Q0WPJ7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.