CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 5
plastid 5
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus, plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
EpiLoc:	cytosol
iPSORT:	plastid
MultiLoc:	nucleus
Plant-mPloc:	nucleus
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH20958	Soybean	nucleus, plastid	89.27	89.47
KRH02160	Soybean	nucleus	67.57	68.19
KRH50955	Soybean	nucleus	65.31	64.94
VIT_05s0020g02320.t01	Wine grape	nucleus	63.73	63.37
PGSC0003DMT400081760	Potato	plastid	55.48	54.49
Solyc01g080430.2.1	Tomato	nucleus	52.54	54.26
GSMUA_Achr3P23730_001	Banana	nucleus	39.44	48.34
GSMUA_Achr2P01510_001	Banana	nucleus	42.26	46.34
GSMUA_Achr3P09160_001	Banana	nucleus	35.25	42.51
KRH71485	Soybean	cytosol, endoplasmic reticulum, nucleus	32.2	34.17
EER99333	Sorghum	nucleus, plastid	32.09	33.49
Zm00001d006317_P002	Maize	plastid	31.64	32.71
HORVU1Hr1G018310.1	Barley	cytosol	31.98	32.49
TraesCS1A01G084200.1	Wheat	cytosol	31.75	32.34
TraesCS1B01G101700.1	Wheat	cytosol	31.75	32.3
TraesCS1D01G085400.1	Wheat	cytosol	31.53	32.07
KRH04325	Soybean	nucleus	24.41	31.81
Os05t0141500-01	Rice	nucleus, plastid	31.19	31.8
KRH58212	Soybean	nucleus	24.97	30.82
KRH28281	Soybean	nucleus, plastid	21.36	27.92
Zm00001d021404_P001	Maize	cytosol	33.11	25.91
OQU88874	Sorghum	nucleus	20.34	22.78
Zm00001d005154_P001	Maize	nucleus	19.32	21.73
Os05t0141400-01	Rice	plastid	3.62	14.29

Protein Annotations

EntrezGene:100777140	Gene3D:3.30.40.10	MapMan:35.1	EMBL:ACUP02009201	ncoils:Coil	EnsemblPlantsGene:GLYMA_15G100500
GO:GO:0003674	GO:GO:0003824	GO:GO:0004842	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0006464	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0008152
GO:GO:0009966	GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	UniProt:I1MFA4
InterPro:IPR001841	InterPro:IPR013083	ProteinID:KRH11312.1	EnsemblPlants:KRH11313	ProteinID:KRH11313	ProteinID:KRH11313.1
PFAM:PF13920	PFscan:PS50089	PANTHER:PTHR10044	PANTHER:PTHR10044:SF141	SUPFAM:SSF57850	UniParc:UPI00023D1D7F
InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr15:-:7820694..7825044

Molecular Weight (calculated)

97814.9 Da

IEP (calculated)

7.499

GRAVY (calculated)

-0.589

Length

885 amino acids

Sequence
(BLAST)

001: MASLVASGSS QMAPSVSVQE KGSRNKRKFR ADPPLGEPNK IIPLPQHESL SYEFSAEKFE ITPGHGQVSA SGMCSVSQDH SDALKLDLGL SSPVASSDVR
101: ISQPKEELEV DEFHDADWSD LTEAQLEELV LSNLDTIFKS AIKKIVACGY IEDVATKAIL RSGICYGCKD AVSNVVDNGL AFLRNGQEIN PSREHYFEDL
201: VQLEKYILAE LVCVLREVRP LFSTGDAMWR LLICDMNVSL ACAMDGDPSS SLGSDGIADG CSSVQTESQS KLETKGPELS LPSPCKSVSS GSQPKKSSVE
301: GNTGLDKSKN SQILVGPSEK EAANSGRDSI DKSSSTSGTS QSPLVEEKCG NIRKVHSSST KRDYILRQKS FHMEKGYRTY GSKGSSRGGR LNGLNGLILD
401: KKLKSVSEPT TINLKSASIN ISKAMGVDVT QDNLNADFSS NDGPSTPTAF SLDSTVTVSR STNTLSSVHD GNIPAVGSSN VLSATDTNLS LSLSSNSKSP
501: TTPVCCNNKP PNSSCMGILH DRSLGKWIPQ DRKDEMILKL VPRVQELQNQ LQEWTEWANQ KVMQAARRLC KDKAELKTLR QEKDEVERLK KEKQSLEENT
601: MKKISEMENA LSKASAQVER TNADVRKFEV ENAALRKEME AAKLRAAESA TSYQEVSRRE KKTQMKFQSW EKQKSLFQEE LMTEKHKLAQ LQQELEQAKV
701: QQQQVEARWQ QAAKAKEELL LQASSIRKER EQIEESAKSK EDMIKLKAEE NLHRYRNGIQ KLEKEIVQLR QKTDSSKIAA LRRGIDGNYA SSCMDMKGTA
801: LRESQATFIS ELVSNLNDCS LIGGVKRERE CVMCLSAEMS VVFLPCAHQV VCTTCNELHE KQGMQDCPSC RSPIQRRIFV RFART

Best Arabidopsis Sequence Match ( AT4G03000.1 )
(BLAST)

001: MVEKQEEMNE FGAVNGGKVG TSSSVSPPQD KGRKNKRKLA DPSPQNAASL TEFPRYELHS FKSQSPLCEN DSNGQLKAEE SDSVGWDDPF ACHLEGLLSS
101: NLLTLFRSAM NQIMDCGYSE DVVLKAISSS RFYCGGTDLV SNIVNDTLSF LKSGKKVAGS RDYVFEDLQQ LVAYSLVEKI SLVREVRPSL STDEAMWRLL
201: ICDLNVLKAF EVDADGLEGS SVSNASKSSE SPVAECNPPK SSDADNPKAP VSNTQSKQSE PVKFGNFANV NNSKNPHASG ATPGKEVFSV STASGEGTKS
301: ASLTSVSDEK LVSCRKGRTK KEMAMLRQKS CVEKIRTYSK GGGYKTAKFG GFLVEKRGKS ASDLLSAQAR NSSSKITTEV MKIPLAESSS TLSNSTKSDS
401: PALDVKEHVT ALPANNAPAP VASEKKSGSE PEEKPSVSTK PAPDYYAAIP YDATLGIYIP RNKRDELILK LVPRMKDLQK ELQDWTDWAN QKVKQATVRL
501: LKDQPELKAL RKEKEEAEEF RKEKQLLEEN TIKRRSEMEL ALNNATNQLE RTNNTIRRLE LEQSLLKRER EAANIRASES AESCREAKER VQRLLKNSQS
601: WEGQKNLLQE ELKSQRDKVA GLQQEVAKAK TRQNQIEATW KQEKSATGKL TAQAAALKKE RGKLEELGKA EEERIKTKAE NDVKYYIENI KRLDTEISKL
701: KLKSDSLKIA ALKKGIDGNN DGNKSGMNHT TNTKANSMAS AKVWENNQGA ESKIKREREC VMCLSEEMSV IFLPCAHQVL CSKCNQLHEK EAMEDCPSCR
801: AKIQRRIQAR FARG

Arabidopsis Description

RF298Putative E3 ubiquitin-protein ligase RF298 [Source:UniProtKB/Swiss-Prot;Acc:Q0WPJ7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.