Factsheet for AT1G03365.2

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra033393.1-P	Field mustard	nucleus	24.67	75.46
CDX89896	Canola	nucleus	62.45	61.34
Solyc09g074160.1.1	Tomato	cytosol	4.01	55.0
AT4G03000.2	Thale cress	nucleus	54.07	54.67
Solyc10g050590.1.1	Tomato	cytosol	3.28	52.94
CDY18168	Canola	nucleus	31.11	49.52
Solyc08g016350.1.1	Tomato	extracellular	4.25	48.61
PGSC0003DMT400009741	Potato	nucleus	6.2	44.74
Solyc08g016370.1.1	Tomato	cytosol, extracellular, plasma membrane	5.59	38.33
KRH71485	Soybean	cytosol, endoplasmic reticulum, nucleus	34.75	34.29
Solyc06g008900.2.1	Tomato	nucleus	32.2	31.47
Solyc09g074140.1.1	Tomato	nucleus	20.41	30.83
GSMUA_Achr3P09160_001	Banana	nucleus	26.85	30.11
GSMUA_Achr3P23730_001	Banana	nucleus	26.25	29.92
PGSC0003DMT400009742	Potato	nucleus	28.68	29.14
Solyc09g074120.1.1	Tomato	nucleus	18.95	28.57
Solyc10g050610.1.1	Tomato	nucleus	10.81	27.99
GSMUA_Achr2P01510_001	Banana	nucleus	27.22	27.76
Solyc09g074200.1.1	Tomato	nucleus	27.1	27.63
Solyc09g074150.1.1	Tomato	nucleus	13.24	26.78
Solyc09g074190.1.1	Tomato	nucleus	26.12	26.77
PGSC0003DMT400074463	Potato	cytosol	14.09	26.48
Solyc09g074130.1.1	Tomato	endoplasmic reticulum	21.99	26.01
EER99333	Sorghum	nucleus, plastid	26.61	25.83
AT1G32530.1	Thale cress	cytosol	22.11	25.6
Zm00001d006317_P002	Maize	plastid	25.88	24.88
Os05t0141500-01	Rice	nucleus, plastid	26.0	24.65
TraesCS1A01G084200.1	Wheat	cytosol	25.76	24.4
AT2G35330.1	Thale cress	endoplasmic reticulum	21.87	24.39
TraesCS1B01G101700.1	Wheat	cytosol	25.76	24.37
TraesCS1D01G085400.1	Wheat	cytosol	25.76	24.37
HORVU1Hr1G018310.1	Barley	cytosol	25.64	24.23
Solyc09g074170.1.1	Tomato	cytosol	9.23	23.75
OQU88874	Sorghum	nucleus	20.78	21.65
Zm00001d005154_P001	Maize	nucleus	19.32	20.2
Zm00001d021404_P001	Maize	cytosol	26.25	19.1
Os05t0141400-01	Rice	plastid	3.65	13.39

Protein Annotations

EntrezGene:10723112	Gene3D:3.30.40.10	MapMan:35.1	UniProt:A0A178WED7	ProteinID:AAC72106.1	ProteinID:AEE27564.1
ProteinID:ANM58631.1	ArrayExpress:AT1G03365	EnsemblPlantsGene:AT1G03365	RefSeq:AT1G03365	TAIR:AT1G03365	RefSeq:AT1G03365-TAIR-G
EnsemblPlants:AT1G03365.2	Unigene:At.75389	ncoils:Coil	GO:GO:0003674	GO:GO:0003824	GO:GO:0004842
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006464
GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0008152	GO:GO:0009966	GO:GO:0009987
GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	GO:GO:0046872	InterPro:IPR001841	InterPro:IPR013083
RefSeq:NP_001184899.1	RefSeq:NP_001321053.1	ProteinID:OAP15723.1	PFAM:PF13920	PFscan:PS50089	PANTHER:PTHR10044
PANTHER:PTHR10044:SF141	UniProt:Q9ZVT8	SUPFAM:SSF57850	UniParc:UPI000009ECD9	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD
SEG:seg	:	:	:	:	:

Description

RF4Putative E3 ubiquitin-protein ligase RF4 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZVT8]

Coordinates

chr1:+:826569..830383

Molecular Weight (calculated)

91542.2 Da

IEP (calculated)

8.833

GRAVY (calculated)

-0.647

Length

823 amino acids

Sequence
(BLAST)

001: MSIVQKQEEM NGCGLNVDKV EAFTVSPQEK GRKNKRKLAD PSQPNASSLT EFPPYELPSL KPQNHLSGNG SVGEVSNQLQ VEVSESVEWD DPFACHLEEL
101: LSSNLLTLFL DTMKQLIDLG YTDDEVLKAV SRCRLYCGGN NLLSNIVNNT LSALKTGDEG AGSGDYVFED LQQLVSYTLV EMISLIKEVR PSLSTVEAMW
201: RLLMCDLNVL QAFEAEGDGL VSSSKLSDSE SLGAESNPPK SSDPDNPKPP QSDPQSNRNE PLKFGNFPNT PNSKKTQSSG TTPGKEVCSG STVSCQGMRS
301: TSFTLVSDEK LVSCRKGRTK KEIAMLRQKS CVEKIRTYSK GSGYKAAKFA SVGSFLLEKR VKSSSEFVPR NSSSKITAEI GVKVSLAEDS GCFVRKNSKL
401: DSPVVVVDAK GYITALPARS VKSASKKKTG SESVTLIPSA SEKKSDSSIP STSEKKSGSE SEEKASVSAK LAPDYYAGIP YDAALGIYVP RDKKDELILK
501: LVPRVNDLQN ELQVWTDWAN QKVKEATGRL LKDQPELKAL RKEREEAEQY KKEKQLLEEN TRKRLSEMDF ALKNATSQLE KAFNTAHRLE LEQSILKKEM
601: EAAKIKAVES AESFREAKER GERSLKDIHS WEGQKIMLQE ELKGQREKVT VLQKEVTKAK NRQNQIEAAL KQERTAKGKL SAQASLIRKE TKELEALGKV
701: EEERIKGKAE TDVKYYIDNI KRLEREISEL KLKSDYSRII ALKKGSSESK ATKRESLGMP KVKRERECVM CLSEEMSVIF LPCAHQVLCF KCNQLHEKEG
801: MMDCPSCRGT IHRRIQARFA RSG

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.