Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc10g050610.1.1 | Tomato | nucleus | 30.14 | 41.51 |
| PGSC0003DMT400009742 | Potato | nucleus | 63.01 | 34.07 |
| Bra036227.1-P | Field mustard | plastid | 29.68 | 18.41 |
| CDY18168 | Canola | nucleus | 20.55 | 17.41 |
| CDY22093 | Canola | nucleus | 16.44 | 16.29 |
| GSMUA_Achr3P09160_001 | Banana | nucleus | 27.17 | 16.21 |
| AT4G03000.2 | Thale cress | nucleus | 29.91 | 16.09 |
| GSMUA_Achr3P23730_001 | Banana | nucleus | 25.34 | 15.37 |
| KRH71485 | Soybean | cytosol, endoplasmic reticulum, nucleus | 28.54 | 14.99 |
| CDX89896 | Canola | nucleus | 28.31 | 14.8 |
| PGSC0003DMT400081760 | Potato | plastid | 30.37 | 14.76 |
| CDY21932 | Canola | nucleus, plastid | 27.63 | 14.72 |
| GSMUA_Achr2P01510_001 | Banana | nucleus | 26.48 | 14.37 |
| AT1G03365.2 | Thale cress | nucleus | 26.48 | 14.09 |
| PGSC0003DMT400052886 | Potato | nucleus | 20.78 | 12.59 |
| Os05t0141500-01 | Rice | nucleus, plastid | 23.74 | 11.98 |
| EER99333 | Sorghum | nucleus, plastid | 23.06 | 11.91 |
| HORVU1Hr1G018310.1 | Barley | cytosol | 23.06 | 11.6 |
| Zm00001d006317_P002 | Maize | plastid | 22.6 | 11.57 |
| TraesCS1A01G084200.1 | Wheat | cytosol | 22.83 | 11.51 |
| TraesCS1B01G101700.1 | Wheat | cytosol | 22.83 | 11.49 |
| TraesCS1D01G085400.1 | Wheat | cytosol | 22.83 | 11.49 |
| OQU88874 | Sorghum | nucleus | 18.95 | 10.51 |
| Zm00001d005154_P001 | Maize | nucleus | 18.49 | 10.29 |
| Bra033393.1-P | Field mustard | nucleus | 6.16 | 10.04 |
| Zm00001d021404_P001 | Maize | cytosol | 22.37 | 8.66 |
| Os05t0141400-01 | Rice | plastid | 4.11 | 8.04 |
| CDX91265 | Canola | cytosol, mitochondrion, nucleus | 4.57 | 7.63 |
| PGSC0003DMT400009741 | Potato | nucleus | 0.46 | 1.75 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400074463 | EnsemblPlantsGene:PGSC0003DMG400028940 | ncoils:Coil | PANTHER:PTHR10044 | PANTHER:PTHR10044:SF164 | PGSC:PGSC0003DMG400028940 |
| SEG:seg | UniParc:UPI000294CACE | UniProt:M1CTQ2 | MapMan:35.1 | : | : |
Description
E3 ubiquitin-protein ligase RF298 [Source:PGSC_GENE;Acc:PGSC0003DMG400028940]
Coordinates
chr5:-:22271793..22273700
Molecular Weight (calculated)
49674.7 Da
IEP (calculated)
7.095
GRAVY (calculated)
-0.567
Length
438 amino acids
Sequence
(BLAST)
(BLAST)
001: MVDDNISDDA DKKSLEEGSR NKRKFVSKLP LGTPTNSHVP SLAEFPRYEL LEKAPKGGTL FEIDPLKGGC PQFDAEQKME TPPDIDWEDT ITTQLLELLT
101: QNISTIFQSA VKRIANCGYS EEITERVILR SGIYHGSKDV VSNVVDGALA LLSREKVFDI SRPVVFVELP FLVYYTLLEM LSKPFTPIAQ NLKSKVLVAS
201: ATPQEPESKN SHVCQVVKGK ESSTPFPKAE AKSKAAVLED KSGAAQKALN SKKDLHWQKT YQFEKNRRIC TGKYVPQNQR DETILLRTSR LETLKKELQG
301: WFDWANEKVM QATRRLGKDK VELKLIRQEK KDAEKVHQEK QILEENTMER IMEIEQMLVN TNSMSETINS LLNTLEMDNV GLKKDMEIVM LSTCKHAMNV
401: KNVLAKEQDA MKKCEAADTE KRSFEEDLST IKLNKTSL
101: QNISTIFQSA VKRIANCGYS EEITERVILR SGIYHGSKDV VSNVVDGALA LLSREKVFDI SRPVVFVELP FLVYYTLLEM LSKPFTPIAQ NLKSKVLVAS
201: ATPQEPESKN SHVCQVVKGK ESSTPFPKAE AKSKAAVLED KSGAAQKALN SKKDLHWQKT YQFEKNRRIC TGKYVPQNQR DETILLRTSR LETLKKELQG
301: WFDWANEKVM QATRRLGKDK VELKLIRQEK KDAEKVHQEK QILEENTMER IMEIEQMLVN TNSMSETINS LLNTLEMDNV GLKKDMEIVM LSTCKHAMNV
401: KNVLAKEQDA MKKCEAADTE KRSFEEDLST IKLNKTSL
001: MVEKQEEMNE FGAVNGGKVG TSSSVSPPQD KGRKNKRKLA DPSPQNAASL TEFPRYELHS FKSQSPLCEN DSNGQLKAEE SDSVGWDDPF ACHLEGLLSS
101: NLLTLFRSAM NQIMDCGYSE DVVLKAISSS RFYCGGTDLV SNIVNDTLSF LKSGKKVAGS RDYVFEDLQQ LVAYSLVEKI SLVREVRPSL STDEAMWRLL
201: ICDLNVLKAF EVDADGLEGS SVSNASKSSE SPVAECNPPK SSDADNPKAP VSNTQSKQSE PVKFGNFANV NNSKNPHASG ATPGKEVFSV STASGEGTKS
301: ASLTSVSDEK LVSCRKGRTK KEMAMLRQKS CVEKIRTYSK GGGYKTAKFG GFLVEKRGKS ASDLLSAQAR NSSSKITTEV MKIPLAESSS TLSNSTKSDS
401: PALDVKEHVT ALPANNAPAP VASEKKSGSE PEEKPSVSTK PAPDYYAAIP YDATLGIYIP RNKRDELILK LVPRMKDLQK ELQDWTDWAN QKVKQATVRL
501: LKDQPELKAL RKEKEEAEEF RKEKQLLEEN TIKRRSEMEL ALNNATNQLE RTNNTIRRLE LEQSLLKRER EAANIRASES AESCREAKER VQRLLKNSQS
601: WEGQKNLLQE ELKSQRDKVA GLQQEVAKAK TRQNQIEVII SFLRN
101: NLLTLFRSAM NQIMDCGYSE DVVLKAISSS RFYCGGTDLV SNIVNDTLSF LKSGKKVAGS RDYVFEDLQQ LVAYSLVEKI SLVREVRPSL STDEAMWRLL
201: ICDLNVLKAF EVDADGLEGS SVSNASKSSE SPVAECNPPK SSDADNPKAP VSNTQSKQSE PVKFGNFANV NNSKNPHASG ATPGKEVFSV STASGEGTKS
301: ASLTSVSDEK LVSCRKGRTK KEMAMLRQKS CVEKIRTYSK GGGYKTAKFG GFLVEKRGKS ASDLLSAQAR NSSSKITTEV MKIPLAESSS TLSNSTKSDS
401: PALDVKEHVT ALPANNAPAP VASEKKSGSE PEEKPSVSTK PAPDYYAAIP YDATLGIYIP RNKRDELILK LVPRMKDLQK ELQDWTDWAN QKVKQATVRL
501: LKDQPELKAL RKEKEEAEEF RKEKQLLEEN TIKRRSEMEL ALNNATNQLE RTNNTIRRLE LEQSLLKRER EAANIRASES AESCREAKER VQRLLKNSQS
601: WEGQKNLLQE ELKSQRDKVA GLQQEVAKAK TRQNQIEVII SFLRN
Arabidopsis Description
RF298Putative E3 ubiquitin-protein ligase RF298 [Source:UniProtKB/Swiss-Prot;Acc:Q0WPJ7]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.