Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- extracellular 4
- endoplasmic reticulum 3
- vacuole 3
- plasma membrane 3
- golgi 3
- mitochondrion 1
- cytosol 1
- nucleus 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc09g074160.1.1 | Tomato | cytosol | 56.94 | 68.33 |
| Solyc10g050590.1.1 | Tomato | cytosol | 38.89 | 54.9 |
| PGSC0003DMT400009741 | Potato | nucleus | 59.72 | 37.72 |
| CDX91265 | Canola | cytosol, mitochondrion, nucleus | 41.67 | 11.45 |
| Bra033393.1-P | Field mustard | nucleus | 41.67 | 11.15 |
| Solyc09g074140.1.1 | Tomato | nucleus | 66.67 | 8.81 |
| Solyc09g074120.1.1 | Tomato | nucleus | 58.33 | 7.69 |
| CDY22093 | Canola | nucleus | 43.06 | 7.01 |
| Solyc09g074130.1.1 | Tomato | endoplasmic reticulum | 65.28 | 6.75 |
| Solyc09g074190.1.1 | Tomato | nucleus | 68.06 | 6.1 |
| Solyc09g074200.1.1 | Tomato | nucleus | 63.89 | 5.7 |
| Bra036227.1-P | Field mustard | plastid | 47.22 | 4.82 |
| Solyc06g008900.2.1 | Tomato | nucleus | 51.39 | 4.39 |
| AT1G03365.2 | Thale cress | nucleus | 48.61 | 4.25 |
| CDY21932 | Canola | nucleus, plastid | 47.22 | 4.14 |
| CDX89896 | Canola | nucleus | 47.22 | 4.06 |
| AT4G03000.2 | Thale cress | nucleus | 45.83 | 4.05 |
| Solyc08g077100.2.1 | Tomato | nucleus | 23.61 | 4.02 |
| KRH71485 | Soybean | cytosol, endoplasmic reticulum, nucleus | 43.06 | 3.72 |
| Solyc08g006980.2.1 | Tomato | nucleus | 36.11 | 3.59 |
| Os05t0141400-01 | Rice | plastid | 11.11 | 3.57 |
| Solyc08g016370.1.1 | Tomato | cytosol, extracellular, plasma membrane | 5.56 | 3.33 |
| GSMUA_Achr3P23730_001 | Banana | nucleus | 33.33 | 3.32 |
| OQU88874 | Sorghum | nucleus | 36.11 | 3.29 |
| GSMUA_Achr2P01510_001 | Banana | nucleus | 36.11 | 3.22 |
| Solyc10g050610.1.1 | Tomato | nucleus | 13.89 | 3.14 |
| Zm00001d005154_P001 | Maize | nucleus | 33.33 | 3.05 |
| Solyc01g080430.2.1 | Tomato | nucleus | 36.11 | 3.03 |
| GSMUA_Achr3P09160_001 | Banana | nucleus | 30.56 | 3.0 |
| EER99333 | Sorghum | nucleus, plastid | 31.94 | 2.71 |
| Zm00001d006317_P002 | Maize | plastid | 31.94 | 2.69 |
| TraesCS1A01G084200.1 | Wheat | cytosol | 30.56 | 2.53 |
| TraesCS1B01G101700.1 | Wheat | cytosol | 30.56 | 2.53 |
| TraesCS1D01G085400.1 | Wheat | cytosol | 30.56 | 2.53 |
| HORVU1Hr1G018310.1 | Barley | cytosol | 30.56 | 2.53 |
| Solyc09g074170.1.1 | Tomato | cytosol | 11.11 | 2.5 |
| Os05t0141500-01 | Rice | nucleus, plastid | 29.17 | 2.42 |
| Zm00001d021404_P001 | Maize | cytosol | 31.94 | 2.03 |
| CDY18168 | Canola | nucleus | 5.56 | 0.77 |
| Solyc09g074150.1.1 | Tomato | nucleus | 2.78 | 0.49 |
Protein Annotations
| EnsemblPlants:Solyc08g016350.1.1 | EnsemblPlantsGene:Solyc08g016350.1 | Gene3D:3.30.40.10 | InterPro:IPR013083 | InterPro:Znf_RING/FYVE/PHD | PANTHER:PTHR10044 |
| PANTHER:PTHR10044:SF164 | SUPFAM:SSF57850 | UniParc:UPI000276B866 | UniProt:K4CJF9 | MapMan:35.2 | : |
Description
No Description!
Coordinates
chr8:-:7357346..7357564
Molecular Weight (calculated)
8211.0 Da
IEP (calculated)
7.271
GRAVY (calculated)
-0.106
Length
72 amino acids
Sequence
(BLAST)
(BLAST)
1: MTKGLVAYVQ SSGNNVLNVE RECLMCMGFL PCAHQFLCED CNVLHQRKGM DICPSCRTQI KERISVHFPY SE
001: MVEKQEEMNE FGAVNGGKVG TSSSVSPPQD KGRKNKRKLA DPSPQNAASL TEFPRYELHS FKSQSPLCEN DSNGQLKAEE SDSVGWDDPF ACHLEGLLSS
101: NLLTLFRSAM NQIMDCGYSE DVVLKAISSS RFYCGGTDLV SNIVNDTLSF LKSGKKVAGS RDYVFEDLQQ LVAYSLVEKI SLVREVRPSL STDEAMWRLL
201: ICDLNVLKAF EVDADGLEGS SVSNASKSSE SPVAECNPPK SSDADNPKAP VSNTQSKQSE PVKFGNFANV NNSKNPHASG ATPGKEVFSV STASGEGTKS
301: ASLTSVSDEK LVSCRKGRTK KEMAMLRQKS CVEKIRTYSK GGGYKTAKFG GFLVEKRGKS ASDLLSAQAR NSSSKITTEV MKIPLAESSS TLSNSTKSDS
401: PALDVKEHVT ALPANNAPAP VASEKKSGSE PEEKPSVSTK PAPDYYAAIP YDATLGIYIP RNKRDELILK LVPRMKDLQK ELQDWTDWAN QKVKQATVRL
501: LKDQPELKAL RKEKEEAEEF RKEKQLLEEN TIKRRSEMEL ALNNATNQLE RTNNTIRRLE LEQSLLKRER EAANIRASES AESCREAKER VQRLLKNSQS
601: WEGQKNLLQE ELKSQRDKVA GLQQEVAKAK TRQNQIEATW KQEKSATGKL TAQAAALKKE RGKLEELGKA EEERIKTKAE NDVKYYIENI KRLDTEISKL
701: KLKSDSLKIA ALKKGIDGNN DGNKSGMNHT TNTKANSMAS AKVWENNQGA ESKIKREREC VMCLSEEMSV IFLPCAHQVL CSKCNQLHEK EAMEDCPSCR
801: AKIQRRIQAR FARG
101: NLLTLFRSAM NQIMDCGYSE DVVLKAISSS RFYCGGTDLV SNIVNDTLSF LKSGKKVAGS RDYVFEDLQQ LVAYSLVEKI SLVREVRPSL STDEAMWRLL
201: ICDLNVLKAF EVDADGLEGS SVSNASKSSE SPVAECNPPK SSDADNPKAP VSNTQSKQSE PVKFGNFANV NNSKNPHASG ATPGKEVFSV STASGEGTKS
301: ASLTSVSDEK LVSCRKGRTK KEMAMLRQKS CVEKIRTYSK GGGYKTAKFG GFLVEKRGKS ASDLLSAQAR NSSSKITTEV MKIPLAESSS TLSNSTKSDS
401: PALDVKEHVT ALPANNAPAP VASEKKSGSE PEEKPSVSTK PAPDYYAAIP YDATLGIYIP RNKRDELILK LVPRMKDLQK ELQDWTDWAN QKVKQATVRL
501: LKDQPELKAL RKEKEEAEEF RKEKQLLEEN TIKRRSEMEL ALNNATNQLE RTNNTIRRLE LEQSLLKRER EAANIRASES AESCREAKER VQRLLKNSQS
601: WEGQKNLLQE ELKSQRDKVA GLQQEVAKAK TRQNQIEATW KQEKSATGKL TAQAAALKKE RGKLEELGKA EEERIKTKAE NDVKYYIENI KRLDTEISKL
701: KLKSDSLKIA ALKKGIDGNN DGNKSGMNHT TNTKANSMAS AKVWENNQGA ESKIKREREC VMCLSEEMSV IFLPCAHQVL CSKCNQLHEK EAMEDCPSCR
801: AKIQRRIQAR FARG
Arabidopsis Description
RF298Putative E3 ubiquitin-protein ligase RF298 [Source:UniProtKB/Swiss-Prot;Acc:Q0WPJ7]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.