Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Zm00001d005140_P003 | |
| Zm00001d020292_P001 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G13330.1 | Zm00001d020292_P001 | AT1G32530.1 | 19187040 |
| AT1G13330.1 | Zm00001d005140_P003 | AT4G29170.1 | 16763194 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EER91004 | Sorghum | cytosol | 94.71 | 94.71 |
| Zm00001d033716_P001 | Maize | cytosol | 84.14 | 86.82 |
| TraesCS4A01G269200.1 | Wheat | nucleus | 85.46 | 85.46 |
| TraesCS4D01G044700.1 | Wheat | cytosol | 85.02 | 85.02 |
| TraesCS4B01G045000.1 | Wheat | nucleus | 85.02 | 85.02 |
| HORVU4Hr1G007340.5 | Barley | nucleus | 83.7 | 78.51 |
| GSMUA_Achr10P... | Banana | cytosol | 73.13 | 73.45 |
| Solyc05g009560.2.1 | Tomato | cytosol | 68.28 | 69.51 |
| KRH45246 | Soybean | cytosol | 68.28 | 68.58 |
| VIT_01s0011g03320.t01 | Wine grape | cytosol | 68.28 | 68.58 |
| AT1G13330.1 | Thale cress | nucleus | 67.4 | 67.7 |
| CDY19376 | Canola | cytosol | 66.96 | 67.26 |
| KRH75396 | Soybean | cytosol | 66.52 | 66.52 |
| CDX97992 | Canola | cytosol | 65.64 | 65.93 |
| Bra019825.1-P | Field mustard | cytosol | 65.64 | 65.93 |
| PGSC0003DMT400033753 | Potato | cytosol | 37.89 | 61.43 |
| CDY19381 | Canola | endoplasmic reticulum | 7.49 | 34.0 |
Protein Annotations
| Gene3D:1.10.10.10 | EntrezGene:100282702 | MapMan:13.3.6.4.5.2 | ProteinID:AQK63555.1 | UniProt:B6TAH2 | ncoils:Coil |
| EMBL:EU961987 | GO:GO:0000003 | GO:GO:0006139 | GO:GO:0006259 | GO:GO:0007049 | GO:GO:0007131 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0016043 | InterPro:Hop2 | InterPro:IPR036388 |
| PFAM:PF07106 | PANTHER:PTHR15938 | UniParc:UPI000182C138 | InterPro:WH-like_DNA-bd_sf | EnsemblPlantsGene:Zm00001d013447 | EnsemblPlants:Zm00001d013447_P001 |
| EnsemblPlants:Zm00001d013447_T001 | : | : | : | : | : |
Description
Pairing protein meu13-like
Coordinates
chr5:+:11827641..11829863
Molecular Weight (calculated)
26141.9 Da
IEP (calculated)
5.333
GRAVY (calculated)
-0.937
Length
227 amino acids
Sequence
(BLAST)
(BLAST)
001: MPPKSDSVEG IVLGFVNEQN RPLNSQNAAD ALQKFNLKKT AVQKALDALA DSGQISFKEY GKQKIYIARQ DQFDIPNGEE LEEMKKTNAK LQEELADQKK
101: AISEVESEVR GLQSNLTLTE ITSKKSELQS EVQEMEEKLN KLRSGVTLVK PEDKKIIENS FAEKVSQWKR RKRMFKELWD NITEHSPKDQ KEFKEELGIE
201: YDEDVDVNVQ SYSDMLASLN KRRKISR
101: AISEVESEVR GLQSNLTLTE ITSKKSELQS EVQEMEEKLN KLRSGVTLVK PEDKKIIENS FAEKVSQWKR RKRMFKELWD NITEHSPKDQ KEFKEELGIE
201: YDEDVDVNVQ SYSDMLASLN KRRKISR
001: MAPKSDNTEA IVLNFVNEQN KPLNTQNAAD ALQKFNLKKT AVQKALDSLA DAGKITFKEY GKQKIYIARQ DQFEIPNSEE LAQMKEDNAK LQEQLQEKKK
101: TISDVESEIK SLQSNLTLEE IQEKDAKLRK EVKEMEEKLV KLREGITLVR PEDKKAVEDM YADKINQWRK RKRMFRDIWD TVTENSPKDV KELKEELGIE
201: YDEDVGLSFQ AYADLIQHGK KRPRGQ
101: TISDVESEIK SLQSNLTLEE IQEKDAKLRK EVKEMEEKLV KLREGITLVR PEDKKAVEDM YADKINQWRK RKRMFRDIWD TVTENSPKDV KELKEELGIE
201: YDEDVGLSFQ AYADLIQHGK KRPRGQ
Arabidopsis Description
HOP2Homologous-pairing protein 2 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q9FX64]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.