Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX97992 | Canola | cytosol | 89.82 | 89.82 |
| Bra019825.1-P | Field mustard | cytosol | 89.82 | 89.82 |
| CDY19376 | Canola | cytosol | 89.38 | 89.38 |
| Solyc05g009560.2.1 | Tomato | cytosol | 73.89 | 74.89 |
| KRH45246 | Soybean | cytosol | 74.78 | 74.78 |
| KRH75396 | Soybean | cytosol | 72.12 | 71.81 |
| VIT_01s0011g03320.t01 | Wine grape | cytosol | 71.68 | 71.68 |
| EER91004 | Sorghum | cytosol | 69.03 | 68.72 |
| PGSC0003DMT400033753 | Potato | cytosol | 42.48 | 68.57 |
| GSMUA_Achr10P... | Banana | cytosol | 68.14 | 68.14 |
| TraesCS4B01G045000.1 | Wheat | nucleus | 68.14 | 67.84 |
| TraesCS4A01G269200.1 | Wheat | nucleus | 67.7 | 67.4 |
| Zm00001d013447_P001 | Maize | cytosol | 67.7 | 67.4 |
| TraesCS4D01G044700.1 | Wheat | cytosol | 66.81 | 66.52 |
| HORVU4Hr1G007340.5 | Barley | nucleus | 67.26 | 62.81 |
| Zm00001d033716_P001 | Maize | cytosol | 61.06 | 62.73 |
| CDY19381 | Canola | endoplasmic reticulum | 12.83 | 58.0 |
Protein Annotations
| Gene3D:1.10.10.10 | MapMan:13.3.6.4.5.2 | EntrezGene:837893 | UniProt:A0A178WCC4 | ProteinID:AAG09555.1 | ProteinID:AEE29001.1 |
| Symbol:AHP2 | EMBL:AJ627484 | EMBL:AK176610 | EMBL:AK227903 | ArrayExpress:AT1G13330 | EnsemblPlantsGene:AT1G13330 |
| RefSeq:AT1G13330 | TAIR:AT1G13330 | RefSeq:AT1G13330-TAIR-G | EnsemblPlants:AT1G13330.1 | TAIR:AT1G13330.1 | EMBL:AY225519 |
| Unigene:At.42036 | EMBL:BT025172 | ncoils:Coil | GO:GO:0000003 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006259 | GO:GO:0006310 | GO:GO:0007049 |
| GO:GO:0007131 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0016043 | GO:GO:0051026 |
| GO:GO:0051321 | InterPro:Hop2 | InterPro:IPR036388 | RefSeq:NP_172791.1 | ProteinID:OAP15451.1 | PFAM:PF07106 |
| PO:PO:0000037 | PO:PO:0000084 | PO:PO:0000293 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 |
| PO:PO:0004507 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0009005 | PO:PO:0009009 | PO:PO:0009010 |
| PO:PO:0009025 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009052 | PO:PO:0025022 |
| PANTHER:PTHR15938 | UniProt:Q9FX64 | SUPFAM:SSF46785 | UniParc:UPI000005F962 | InterPro:WH-like_DNA-bd_sf | InterPro:WH_DNA-bd_sf |
| SEG:seg | : | : | : | : | : |
Description
HOP2Homologous-pairing protein 2 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q9FX64]
Coordinates
chr1:+:4567935..4570598
Molecular Weight (calculated)
26246.2 Da
IEP (calculated)
5.620
GRAVY (calculated)
-0.996
Length
226 amino acids
Sequence
(BLAST)
(BLAST)
001: MAPKSDNTEA IVLNFVNEQN KPLNTQNAAD ALQKFNLKKT AVQKALDSLA DAGKITFKEY GKQKIYIARQ DQFEIPNSEE LAQMKEDNAK LQEQLQEKKK
101: TISDVESEIK SLQSNLTLEE IQEKDAKLRK EVKEMEEKLV KLREGITLVR PEDKKAVEDM YADKINQWRK RKRMFRDIWD TVTENSPKDV KELKEELGIE
201: YDEDVGLSFQ AYADLIQHGK KRPRGQ
101: TISDVESEIK SLQSNLTLEE IQEKDAKLRK EVKEMEEKLV KLREGITLVR PEDKKAVEDM YADKINQWRK RKRMFRDIWD TVTENSPKDV KELKEELGIE
201: YDEDVGLSFQ AYADLIQHGK KRPRGQ
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.