Factsheet for VIT_01s0010g03780.t01

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, golgi, plasma membrane

Predictor Summary:

extracellular 5
endoplasmic reticulum 6
vacuole 5
plasma membrane 6
golgi 6
plastid 1
nucleus 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, golgi, plasma membrane
Any Predictor:	nucleus, peroxisome, plastid, secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	nucleus, plastid
Predotar:	secretory
PProwler:	secretory
PTS1:	peroxisome
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	golgi

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_05s0020g02210.t01
VIT_05s0020g04980.t01
VIT_07s0104g00880.t01
VIT_12s0057g00690.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G27320.1	VIT_05s0020g02210.t01	AT3G21510.1	16965536
AT1G27320.1	VIT_07s0104g00880.t01	AT3G29350.1	16965536
AT1G27320.1	VIT_12s0057g00690.t01	AT5G35750.1	16965536
AT1G27320.1	VIT_05s0020g04980.t01	AT5G43560.1	18642946

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_04s0008g03460.t01	Wine grape	plastid	30.61	94.64
PGSC0003DMT400084727	Potato	cytosol, golgi, plasma membrane	41.1	79.37
KRH58780	Soybean	endoplasmic reticulum, golgi, plasma membrane	75.94	76.6
KRH42680	Soybean	plasma membrane	75.65	76.31
Solyc05g015610.2.1	Tomato	endoplasmic reticulum, golgi, plasma membrane	73.15	73.64
AT1G27320.1	Thale cress	endoplasmic reticulum, golgi, plasma membrane	71.8	72.01
Bra030037.1-P	Field mustard	endoplasmic reticulum, golgi, plasma membrane	70.07	71.58
CDY03909	Canola	endoplasmic reticulum, golgi, plasma membrane	68.72	71.33
CDY15717	Canola	endoplasmic reticulum, golgi, plasma membrane	70.07	71.3
GSMUA_AchrUn_...	Banana	endoplasmic reticulum, peroxisome, plasma membrane	65.35	69.64
GSMUA_AchrUn_...	Banana	cytosol, golgi, plasma membrane	65.64	68.34
GSMUA_Achr4P15980_001	Banana	cytosol	64.1	66.73
TraesCS3D01G426600.1	Wheat	plasma membrane	60.64	63.32
Os01t0923700-04	Rice	endoplasmic reticulum, golgi, peroxisome	62.18	63.15
TraesCS3A01G433200.1	Wheat	peroxisome	60.54	62.71
Zm00001d042312_P003	Maize	golgi, mitochondrion, plasma membrane	60.73	62.66
KXG34012	Sorghum	cytosol, peroxisome, plasma membrane	60.44	62.49
TraesCS3B01G469000.1	Wheat	cytosol, golgi, mitochondrion, peroxisome	60.15	61.94
Zm00001d012005_P002	Maize	plasma membrane	61.31	61.02
HORVU3Hr1G094870.10	Barley	plasma membrane	59.87	59.41
VIT_01s0011g06190.t01	Wine grape	mitochondrion	52.36	51.86
VIT_12s0057g00690.t01	Wine grape	endoplasmic reticulum, golgi	59.19	48.35
VIT_19s0093g00580.t01	Wine grape	cytosol	16.17	22.67
VIT_07s0005g00850.t01	Wine grape	cytosol	13.57	22.17
VIT_04s0069g00750.t01	Wine grape	nucleus	17.52	21.51
VIT_14s0081g00630.t01	Wine grape	plasma membrane	14.73	20.13
VIT_05s0049g00090.t01	Wine grape	plasma membrane	14.15	19.24
VIT_04s0023g03680.t01	Wine grape	mitochondrion	21.17	17.81
VIT_07s0005g01380.t01	Wine grape	plasma membrane	17.32	16.45
VIT_06s0004g05240.t01	Wine grape	endoplasmic reticulum, plasma membrane	7.22	13.61

Protein Annotations

Gene3D:1.10.287.130	EntrezGene:100247122	wikigene:100247122	MapMan:11.4.2.1	Gene3D:3.30.450.350	Gene3D:3.40.50.2300
ProteinID:ACO88937	ProteinID:ACO88937.1	ProteinID:CBI27670	ProteinID:CBI27670.3	InterPro:CHASE_dom	InterPro:CheY-like_superfamily
ncoils:Coil	UniProt:D7TAZ7	EMBL:FJ822976	EMBL:FN595754	GO:GO:0000155	GO:GO:0000160
GO:GO:0003674	GO:GO:0003824	GO:GO:0004871	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0006139	GO:GO:0006464	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0008152
GO:GO:0009116	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016301	GO:GO:0016310
GO:GO:0016740	GO:GO:0016772	GO:GO:0018106	GO:GO:0019538	GO:GO:0023014	GO:GO:0038023
InterPro:HATPase_C	InterPro:HATPase_C_sf	InterPro:HisK_dim/P	InterPro:HisK_dim/P_sf	InterPro:His_kinase_dom	InterPro:IPR001789
InterPro:IPR005467	InterPro:IPR006189	InterPro:IPR036890	EntrezGene:LOC100247122	wikigene:LOC100247122	PFAM:PF00072
PFAM:PF00512	PFAM:PF02518	PFAM:PF03924	PRINTS:PR00344	InterPro:PRibTrfase_dom	PFscan:PS50109
PFscan:PS50110	PFscan:PS50839	PANTHER:PTHR43719	PANTHER:PTHR43719:SF14	SMART:SM00387	SMART:SM00388
SMART:SM00448	SMART:SM01079	SUPFAM:SSF47384	SUPFAM:SSF52172	SUPFAM:SSF55874	InterPro:Sig_transdc_His_kin-like_C
InterPro:Sig_transdc_resp-reg_receiver	TIGR:TC64607	TMHMM:TMhelix	UniParc:UPI0001982B2E	ArrayExpress:VIT_01s0010g03780	EnsemblPlantsGene:VIT_01s0010g03780
EnsemblPlants:VIT_01s0010g03780.t01	unigene:Vvi.6934	RefSeq:XP_002276961	RefSeq:XP_002276961.1	SEG:seg	:

Description

No Description!

Coordinates

chr1:+:21156000..21161969

Molecular Weight (calculated)

115708.0 Da

IEP (calculated)

6.922

GRAVY (calculated)

-0.127

Length

1039 amino acids

Sequence
(BLAST)

0001: MSFLHVLGFG LKVGHLLLML CCWIISVIPV NWFINGGVME TKAGLLSDGG KIWMRLWEKM FGNSGKIPHH WYQKFWSKKV GKTWWRKLLF TWVLMWIMVS
0101: LWIFSYLSLQ ASEKRKETLG SMCDERARML QDQFNVSMNH VQAMSILIST FHHGKNPSAI DQGTFARYTE RTAFERPLTS GVAYAVRVLH SEREQFEKQQ
0201: GWTIKRMDTP EQTPVHEDNH ASENLEPSPV QEEYAPVIFA QDTVSHVISL DMLSGKEDRE NVLRARASGK AVLTAPFRLF KTNSLGVILT FAVYKSDLLS
0301: NATPNERIQA THGYLGGVFH IESLVEKLLQ QLASKQTILV NVYDTTDTDH PISMYGSNVS DDGLQHVSAL NFGDPFRKHE MRCRFKQKAP WPWLAITTST
0401: GILVIALLVG HIFHATVNRI AKVEEDYRDM MMLKKRAEAA DVAKSQFLAT VSHEIRTPMN GVLGMLHMLI DTDLDVTQQD YVRTAQASGK ALVSLINEVL
0501: DQAKIESGKL ELEELQFDLQ AILDDVLSLF SGKSQEKGVE LAVYISDRVP KMLIGDPGRF RQIITNLMGN SIKFTEKGHI FVTIHLVEEL MDSIEVETES
0601: SSKNTLSGLP VADRRCSWEG FRTFNQEGLT SPFSSSSSDL IHLIVSVEDT GVGIPEEAQS RVFTPFMQVG PSISRIHGGT GIGLSISKCL VGLMNGEIGF
0701: VSRPNVGSTF TFTAVFSGGC SKSNEYKCQP TNNQSNAVSS EFQGMAALVV DPNPVRAKVS RYHIQRLGIR VEVTSDLNQV FSSISSGNTA INMVLVEQDV
0801: WDKDSNLSAL FGNKLKKLDL EVPPKLFLLA NSISSTRNSA AISGVYNPTV IMKPLRASML AASLQRALGV GNKGVCQNGE HPSLSLRNLL RGRKILVVDD
0901: NNVNLRVAAG ALKKYGADVV CADSGKSAIP LLKPPHDFDA CFMDIQMPEM DGFEATGIIR EMERNVNSRI QHGEVSVEAY ANISNWHLPI LAMTADVIQA
1001: THEECLRCGM DGYVSKPFEA EQLYREVSRF FQPPPEQNQ

Best Arabidopsis Sequence Match ( AT1G27320.1 )
(BLAST)

0001: MSLFHVLGFG VKIGHLFWML CCWFVSWFVD NGIEDKSGLL VGSVGDLEKT KMTTLKKKNK MWFWNKISSS GLKIPSFSYQ FLGSVKFNKA WWRKLVVVWV
0101: VFWVLVSIWT FWYFSSQAME KRKETLASMC DERARMLQDQ FNVSMNHVQA MSILISTFHH GKIPSAIDQR TFSEYTDRTS FERPLTSGVA YAMRVLHSER
0201: EEFERQQGWT IRKMYSLEQN PVHKDDYDLE ALEPSPVQEE YAPVIFAQDT VSHVVSLDML SGKEDRENVL RARSSGKGVL TAPFPLIKTN RLGVILTFAV
0301: YKRDLPSNAT PKERIEATNG YLGGVFDIES LVENLLQQLA SKQTILVNVY DITNHSQPIS MYGTNVSADG LERVSPLIFG DPLRKHEMRC RFKQKPPWPV
0401: LSMVTSFGIL VIALLVAHII HATVSRIHKV EEDCDKMKQL KKKAEAADVA KSQFLATVSH EIRTPMNGVL GMLHMLMDTE LDVTQQDYVR TAQASGKALV
0501: SLINEVLDQA KIESGKLELE EVRFDLRGIL DDVLSLFSSK SQQKGVELAV YISDRVPDML IGDPGRFRQI LTNLMGNSIK FTEKGHIFVT VHLVDELFES
0601: IDGETASSPE STLSGLPVAD RQRSWENFKA FSSNGHRSFE PSPPDINLIV SVEDTGVGIP VEAQSRIFTP FMQVGPSISR THGGTGIGLS ISKCLVGLMK
0701: GEIGFSSTPK VGSTFTFTAV FSNGMQPAER KNDNNQPIFS EFRGMKAVVV DHRPARAKVS WYHFQRLGIR VEVVPRVEQA LHYLKIGTTT VNMILIEQEI
0801: WNREADDFIK KLQKDPLFLS PKLILLANSV ESSISEALCT GIDPPIVIVK PLRASMLAAT LQRGLGIGIR EPPQHKGPPA LILRNLLLGR KILIVDDNNV
0901: NLRVAAGALK KYGADVVCAE SGIKAISLLK PPHEFDACFM DIQMPEMDGF EATRRIRDME EEMNKRIKNG EALIVENGNK TSWHLPVLAM TADVIQATHE
1001: ECLKCGMDGY VSKPFEAEQL YREVSRFFNS PSDTES

Arabidopsis Description

AHK3HK3 [Source:UniProtKB/TrEMBL;Acc:A0A178WL02]
SUBAcon: [endoplasmic reticulum,golgi,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.