Factsheet for GSMUA_AchrUn_randomP10030_001

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, golgi, cytosol

Predictor Summary:

nucleus 1
cytosol 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 2
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, golgi, plasma membrane
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	golgi

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr11P...
GSMUA_Achr1P22740_001
GSMUA_Achr2P12590_001
GSMUA_Achr4P17470_001
GSMUA_Achr5P03190_001
GSMUA_Achr7P14570_001
GSMUA_Achr7P14620_001
GSMUA_AchrUn_...
GSMUA_AchrUn_...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G27320.1	GSMUA_Achr11P...	AT3G21510.1	16965536
AT1G27320.1	GSMUA_Achr7P14570_001	AT3G21510.1	16965536
AT1G27320.1	GSMUA_Achr7P14620_001	AT3G21510.1	16965536
AT1G27320.1	GSMUA_AchrUn_...	AT3G21510.1	16965536
AT1G27320.1	GSMUA_Achr11P...	AT3G29350.1	16965536
AT1G27320.1	GSMUA_Achr7P14570_001	AT3G29350.1	16965536
AT1G27320.1	GSMUA_Achr7P14620_001	AT3G29350.1	16965536
AT1G27320.1	GSMUA_AchrUn_...	AT3G29350.1	16965536
AT1G27320.1	GSMUA_Achr1P22740_001	AT5G35750.1	16965536
AT1G27320.1	GSMUA_Achr4P17470_001	AT5G35750.1	16965536
AT1G27320.1	GSMUA_AchrUn_...	AT5G35750.1	16965536
AT1G27320.1	GSMUA_Achr2P12590_001	AT5G43560.1	18642946
AT1G27320.1	GSMUA_Achr5P03190_001	AT5G43560.1	18642946

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_AchrUn_...	Banana	endoplasmic reticulum, peroxisome, plasma membrane	86.07	88.1
GSMUA_Achr4P15980_001	Banana	cytosol	83.27	83.27
PGSC0003DMT400084727	Potato	cytosol, golgi, plasma membrane	36.57	67.84
TraesCS3D01G426600.1	Wheat	plasma membrane	67.33	67.54
TraesCS3A01G433200.1	Wheat	peroxisome	67.33	67.0
Os01t0923700-04	Rice	endoplasmic reticulum, golgi, peroxisome	68.54	66.86
Zm00001d042312_P003	Maize	golgi, mitochondrion, plasma membrane	67.43	66.83
KXG34012	Sorghum	cytosol, peroxisome, plasma membrane	67.13	66.67
TraesCS3B01G469000.1	Wheat	cytosol, golgi, mitochondrion, peroxisome	67.23	66.5
VIT_01s0010g03780.t01	Wine grape	endoplasmic reticulum, golgi, plasma membrane	68.34	65.64
Zm00001d012005_P002	Maize	plasma membrane	67.84	64.85
KRH42680	Soybean	plasma membrane	65.73	63.69
HORVU3Hr1G094870.10	Barley	plasma membrane	66.73	63.61
KRH58780	Soybean	endoplasmic reticulum, golgi, plasma membrane	65.33	63.3
CDY03909	Canola	endoplasmic reticulum, golgi, plasma membrane	61.32	61.14
Solyc05g015610.2.1	Tomato	endoplasmic reticulum, golgi, plasma membrane	63.13	61.05
AT1G27320.1	Thale cress	endoplasmic reticulum, golgi, plasma membrane	62.83	60.52
Bra030037.1-P	Field mustard	endoplasmic reticulum, golgi, plasma membrane	61.42	60.28
CDY15717	Canola	endoplasmic reticulum, golgi, plasma membrane	61.42	60.04
GSMUA_Achr4P17470_001	Banana	cytosol	44.89	57.81
VIT_04s0008g03460.t01	Wine grape	plastid	19.44	57.74
GSMUA_AchrUn_...	Banana	cytosol	53.11	55.67
GSMUA_Achr10P...	Banana	cytosol	48.2	54.47
GSMUA_Achr8P22930_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	45.89	54.01
GSMUA_Achr7P11260_001	Banana	mitochondrion	48.6	53.24
GSMUA_Achr1P22740_001	Banana	cytosol	39.78	48.77
GSMUA_Achr5P00120_001	Banana	cytosol	9.82	27.37
GSMUA_Achr1P23390_001	Banana	cytosol	18.94	21.62
GSMUA_Achr11P...	Banana	cytosol	12.93	20.32
GSMUA_Achr5P21290_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	11.62	20.1
GSMUA_Achr3P22920_001	Banana	extracellular	18.34	19.06
GSMUA_Achr7P26840_001	Banana	plasma membrane	12.32	18.55
GSMUA_Achr11P...	Banana	plasma membrane	13.63	17.94
GSMUA_AchrUn_...	Banana	endoplasmic reticulum, extracellular, plasma membrane	11.52	17.64
GSMUA_Achr8P14350_001	Banana	endoplasmic reticulum	12.73	16.78
GSMUA_Achr11P...	Banana	cytosol	5.81	15.76

Protein Annotations

Gene3D:1.10.287.130	MapMan:11.4.2.1	Gene3D:3.30.450.350	Gene3D:3.40.50.2300	InterPro:CHASE_dom	InterPro:CheY-like_superfamily
GO:GO:0000155	GO:GO:0000160	GO:GO:0003674	GO:GO:0003824	GO:GO:0004871	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0006464	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016301	GO:GO:0016310
GO:GO:0016740	GO:GO:0016772	GO:GO:0019538	GO:GO:0023014	GO:GO:0038023	EnsemblPlantsGene:GSMUA_AchrUn_randomG10030_001
EnsemblPlants:GSMUA_AchrUn_randomP10030_001	EnsemblPlants:GSMUA_AchrUn_randomT10030_001	InterPro:HATPase_C	InterPro:HATPase_C_sf	InterPro:HisK_dim/P	InterPro:HisK_dim/P_sf
InterPro:His_kinase_dom	InterPro:IPR001789	InterPro:IPR005467	InterPro:IPR006189	InterPro:IPR036890	UniProt:M0U7W3
PFAM:PF00072	PFAM:PF00512	PFAM:PF02518	PFAM:PF03924	PRINTS:PR00344	PFscan:PS50109
PFscan:PS50110	PFscan:PS50839	PANTHER:PTHR43719	PANTHER:PTHR43719:SF14	SMART:SM00387	SMART:SM00388
SMART:SM00448	SMART:SM01079	SUPFAM:SSF47384	SUPFAM:SSF52172	SUPFAM:SSF55874	InterPro:Sig_transdc_His_kin-like_C
InterPro:Sig_transdc_resp-reg_receiver	TMHMM:TMhelix	UniParc:UPI000295E76B	SEG:seg	:	:

Description

Histidine kinase 3 [Source:GMGC_GENE;Acc:GSMUA_AchrUn_randomG10030_001]

Coordinates

chrchrUn_random:-:47827973..47832912

Molecular Weight (calculated)

112876.0 Da

IEP (calculated)

7.877

GRAVY (calculated)

-0.178

Length

998 amino acids

Sequence
(BLAST)

001: MNWFIDAQIM EQKTGYLSDK SNLWLELLKK FSIKDWKNNL CNRLFGSKKV RGTWWRKLLL LWIIGWFLGS LWIFWFMNSQ AVEKRREMLA SMCDERARML
101: QDQFNVSMNH LQALAILIST FHHAKDPSAI DQITFARYAE RTAFERPLTS GVAYAVKVLR SEREQFEKQQ GWKIKRMDST EQPPAREEDA DLENRDEYAP
201: VIFAQDTYRH VISFDMLTGK EDRENILRAR ESGKGVLTAP FRLLKSRRLG VILTYAVYKS ELTSKATPAE RIQAAIGYLG GIFDVEALVD KLLHQLACKH
301: SMMVNVYDKT NPDEPIIMYG SNMTNVGLYH ISTLNFGDPI RKHEMHCRFK QKSPLPWLAI TTSIGTLVIA LLVGYIFHAT VSRIAKVEDD YRQMMELKGR
401: AETADVAKSQ FLATVSHEIR TPMNGVLGML QMLMDTDLDI TQEDYVRTAQ ASGKALVSLI NEVLDQAKIE SGKLELEAVP FDLRAVLDDI LSLFYGKAQE
501: KGLELAVYVS DQVPDVLVGD HGRIRQIITN LIGNSIKFTE RGHIYLTVHI FEEVLNSLDK EVEVHSTDTL CGFPVANRRR SWESFKNFKL ELPASDPSLL
601: STSSNHINLI ISVEDTGVGI PLEAQSRVFT PFMQVGPSIS RIHGGTGIGL SISKCLVGLM KGEIGFVSQP QIGSTFTFTV VLTRACTNSN EYKSSEFHGM
701: IALVVDHRPA RAKVTKYHLQ RLGVNAILEI DPNQVLSRLT SGTSTINMVL VEKETWSKDS SIWPFIISKL KGNQLDIPKI LLLANPTSSV KNNASSSMEY
801: ISTIITKPLR ASMLQVSLRR AMGCGDGEHS RNGRLPQLSL RGLLHEKQIL VVDDNIVNLR VAFGALKKYG AEVTCAESGK KAIGMLKPPH KFDACFMDIQ
901: MPEMDGFEAT KRIREMEADI NKQIECREVP VETFENVLHW HVPILAMTAD VIQATHEECL RCGMDGYVSK PFEGEQLYRE VTRFFKQPQK RIDNEVKC

Best Arabidopsis Sequence Match ( AT1G27320.1 )
(BLAST)

0001: MSLFHVLGFG VKIGHLFWML CCWFVSWFVD NGIEDKSGLL VGSVGDLEKT KMTTLKKKNK MWFWNKISSS GLKIPSFSYQ FLGSVKFNKA WWRKLVVVWV
0101: VFWVLVSIWT FWYFSSQAME KRKETLASMC DERARMLQDQ FNVSMNHVQA MSILISTFHH GKIPSAIDQR TFSEYTDRTS FERPLTSGVA YAMRVLHSER
0201: EEFERQQGWT IRKMYSLEQN PVHKDDYDLE ALEPSPVQEE YAPVIFAQDT VSHVVSLDML SGKEDRENVL RARSSGKGVL TAPFPLIKTN RLGVILTFAV
0301: YKRDLPSNAT PKERIEATNG YLGGVFDIES LVENLLQQLA SKQTILVNVY DITNHSQPIS MYGTNVSADG LERVSPLIFG DPLRKHEMRC RFKQKPPWPV
0401: LSMVTSFGIL VIALLVAHII HATVSRIHKV EEDCDKMKQL KKKAEAADVA KSQFLATVSH EIRTPMNGVL GMLHMLMDTE LDVTQQDYVR TAQASGKALV
0501: SLINEVLDQA KIESGKLELE EVRFDLRGIL DDVLSLFSSK SQQKGVELAV YISDRVPDML IGDPGRFRQI LTNLMGNSIK FTEKGHIFVT VHLVDELFES
0601: IDGETASSPE STLSGLPVAD RQRSWENFKA FSSNGHRSFE PSPPDINLIV SVEDTGVGIP VEAQSRIFTP FMQVGPSISR THGGTGIGLS ISKCLVGLMK
0701: GEIGFSSTPK VGSTFTFTAV FSNGMQPAER KNDNNQPIFS EFRGMKAVVV DHRPARAKVS WYHFQRLGIR VEVVPRVEQA LHYLKIGTTT VNMILIEQEI
0801: WNREADDFIK KLQKDPLFLS PKLILLANSV ESSISEALCT GIDPPIVIVK PLRASMLAAT LQRGLGIGIR EPPQHKGPPA LILRNLLLGR KILIVDDNNV
0901: NLRVAAGALK KYGADVVCAE SGIKAISLLK PPHEFDACFM DIQMPEMDGF EATRRIRDME EEMNKRIKNG EALIVENGNK TSWHLPVLAM TADVIQATHE
1001: ECLKCGMDGY VSKPFEAEQL YREVSRFFNS PSDTES

Arabidopsis Description

AHK3HK3 [Source:UniProtKB/TrEMBL;Acc:A0A178WL02]
SUBAcon: [endoplasmic reticulum,golgi,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.