Factsheet for VIT_04s0008g03460.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 3
plastid 4
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_05s0020g02210.t01
VIT_05s0020g04980.t01
VIT_07s0104g00880.t01
VIT_12s0057g00690.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G27320.1	VIT_05s0020g02210.t01	AT3G21510.1	16965536
AT1G27320.1	VIT_07s0104g00880.t01	AT3G29350.1	16965536
AT1G27320.1	VIT_12s0057g00690.t01	AT5G35750.1	16965536
AT1G27320.1	VIT_05s0020g04980.t01	AT5G43560.1	18642946

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_01s0010g03780.t01	Wine grape	endoplasmic reticulum, golgi, plasma membrane	94.64	30.61
KRH42680	Soybean	plasma membrane	65.18	21.26
KRH58780	Soybean	endoplasmic reticulum, golgi, plasma membrane	64.88	21.16
Solyc05g015610.2.1	Tomato	endoplasmic reticulum, golgi, plasma membrane	61.9	20.16
GSMUA_AchrUn_...	Banana	cytosol, golgi, plasma membrane	57.74	19.44
AT1G27320.1	Thale cress	endoplasmic reticulum, golgi, plasma membrane	58.33	18.92
CDY03909	Canola	endoplasmic reticulum, golgi, plasma membrane	55.65	18.68
GSMUA_AchrUn_...	Banana	endoplasmic reticulum, peroxisome, plasma membrane	53.57	18.46
TraesCS3D01G426600.1	Wheat	plasma membrane	54.17	18.29
Bra030037.1-P	Field mustard	endoplasmic reticulum, golgi, plasma membrane	55.36	18.29
CDY15717	Canola	endoplasmic reticulum, golgi, plasma membrane	55.36	18.22
KXG34012	Sorghum	cytosol, peroxisome, plasma membrane	54.46	18.21
Os01t0923700-04	Rice	endoplasmic reticulum, golgi, peroxisome	55.06	18.08
Zm00001d042312_P003	Maize	golgi, mitochondrion, plasma membrane	53.87	17.97
TraesCS3A01G433200.1	Wheat	peroxisome	53.57	17.95
TraesCS3B01G469000.1	Wheat	cytosol, golgi, mitochondrion, peroxisome	53.87	17.94
GSMUA_Achr4P15980_001	Banana	cytosol	52.68	17.74
Zm00001d012005_P002	Maize	plasma membrane	54.46	17.53
HORVU3Hr1G094870.10	Barley	plasma membrane	53.27	17.1
VIT_01s0011g06190.t01	Wine grape	mitochondrion	46.73	14.97
VIT_12s0057g00690.t01	Wine grape	endoplasmic reticulum, golgi	47.92	12.66
VIT_14s0081g00630.t01	Wine grape	plasma membrane	14.29	6.32
VIT_05s0049g00090.t01	Wine grape	plasma membrane	14.29	6.28
VIT_07s0005g01380.t01	Wine grape	plasma membrane	19.35	5.94
VIT_04s0069g00750.t01	Wine grape	nucleus	14.88	5.91
VIT_04s0023g03680.t01	Wine grape	mitochondrion	19.05	5.18
VIT_19s0093g00580.t01	Wine grape	cytosol	10.71	4.86
VIT_06s0004g05240.t01	Wine grape	endoplasmic reticulum, plasma membrane	3.27	2.0
VIT_07s0005g00850.t01	Wine grape	cytosol	3.27	1.73
PGSC0003DMT400084727	Potato	cytosol, golgi, plasma membrane	0.89	0.56

Protein Annotations

EntrezGene:100252542	wikigene:100252542	Gene3D:3.40.50.2300	MapMan:35.1	ProteinID:CCB46704	ProteinID:CCB46704.1
InterPro:CheY-like_superfamily	UniProt:F6H3E0	EMBL:FN595231	GO:GO:0000160	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0006139	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0008152
GO:GO:0009116	GO:GO:0009987	InterPro:IPR001789	EntrezGene:LOC100252542	wikigene:LOC100252542	PFAM:PF00072
InterPro:PRibTrfase_dom	PFscan:PS50110	PANTHER:PTHR43719	PANTHER:PTHR43719:SF14	SMART:SM00448	SUPFAM:SSF52172
InterPro:Sig_transdc_resp-reg_receiver	UniParc:UPI000210A961	ArrayExpress:VIT_04s0008g03460	EnsemblPlantsGene:VIT_04s0008g03460	EnsemblPlants:VIT_04s0008g03460.t01	RefSeq:XP_002281288
RefSeq:XP_002281288.1	RefSeq:XP_002281288.2	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr4:-:2870325..2871344

Molecular Weight (calculated)

36723.1 Da

IEP (calculated)

7.276

GRAVY (calculated)

-0.173

Length

336 amino acids

Sequence
(BLAST)

001: MLIANPSKVT TVFSGGCSIS NEYKCQPTNN QSNAVSSEFQ GMAALVVDPN PVRAKVSRHH IQRLGIHVEV TSDLNQVFSG ISSGNTAINR VLVEHDVWDK
101: DSNLSALFVN KLKKLDLEVP PKLFLLANSI SSTRNSAAIS GVYNSTVIMK PLRAGMLAAS LQRALGVGNK GVCQNGEHPS LSLRSLLRGR KILVVDDNNV
201: NLRVAAGALK KYGADMVCAD SGKSAIPLLK PPHDFDACFM DIQMPEMDGF EATGIIREME RNVNSRIQHG EVSVEAYANI SNWHLPILAM TADVIQATHE
301: ECLRCGMDGH VSKPFEAEQL YREVSRFFQP PPEQNQ

Best Arabidopsis Sequence Match ( AT1G27320.1 )
(BLAST)

0001: MSLFHVLGFG VKIGHLFWML CCWFVSWFVD NGIEDKSGLL VGSVGDLEKT KMTTLKKKNK MWFWNKISSS GLKIPSFSYQ FLGSVKFNKA WWRKLVVVWV
0101: VFWVLVSIWT FWYFSSQAME KRKETLASMC DERARMLQDQ FNVSMNHVQA MSILISTFHH GKIPSAIDQR TFSEYTDRTS FERPLTSGVA YAMRVLHSER
0201: EEFERQQGWT IRKMYSLEQN PVHKDDYDLE ALEPSPVQEE YAPVIFAQDT VSHVVSLDML SGKEDRENVL RARSSGKGVL TAPFPLIKTN RLGVILTFAV
0301: YKRDLPSNAT PKERIEATNG YLGGVFDIES LVENLLQQLA SKQTILVNVY DITNHSQPIS MYGTNVSADG LERVSPLIFG DPLRKHEMRC RFKQKPPWPV
0401: LSMVTSFGIL VIALLVAHII HATVSRIHKV EEDCDKMKQL KKKAEAADVA KSQFLATVSH EIRTPMNGVL GMLHMLMDTE LDVTQQDYVR TAQASGKALV
0501: SLINEVLDQA KIESGKLELE EVRFDLRGIL DDVLSLFSSK SQQKGVELAV YISDRVPDML IGDPGRFRQI LTNLMGNSIK FTEKGHIFVT VHLVDELFES
0601: IDGETASSPE STLSGLPVAD RQRSWENFKA FSSNGHRSFE PSPPDINLIV SVEDTGVGIP VEAQSRIFTP FMQVGPSISR THGGTGIGLS ISKCLVGLMK
0701: GEIGFSSTPK VGSTFTFTAV FSNGMQPAER KNDNNQPIFS EFRGMKAVVV DHRPARAKVS WYHFQRLGIR VEVVPRVEQA LHYLKIGTTT VNMILIEQEI
0801: WNREADDFIK KLQKDPLFLS PKLILLANSV ESSISEALCT GIDPPIVIVK PLRASMLAAT LQRGLGIGIR EPPQHKGPPA LILRNLLLGR KILIVDDNNV
0901: NLRVAAGALK KYGADVVCAE SGIKAISLLK PPHEFDACFM DIQMPEMDGF EATRRIRDME EEMNKRIKNG EALIVENGNK TSWHLPVLAM TADVIQATHE
1001: ECLKCGMDGY VSKPFEAEQL YREVSRFFNS PSDTES

Arabidopsis Description

AHK3HK3 [Source:UniProtKB/TrEMBL;Acc:A0A178WL02]
SUBAcon: [golgi,plasma membrane,endoplasmic reticulum]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.