Factsheet for VIT_08s0007g03910.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
mitochondrion 2
cytosol 2
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_05s0049g00090.t01
VIT_07s0005g00850.t01
VIT_07s0005g01380.t01
VIT_19s0093g00580.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G03730.1	VIT_19s0093g00580.t01	AT1G66340.1	12837948
AT5G03730.1	VIT_19s0093g00580.t01	AT1G66340.1	8417317
AT5G03730.1	VIT_19s0093g00580.t01	AT1G66340.1	9560288
AT5G03730.1	VIT_07s0005g00850.t01	AT2G40940.1	9560288
AT5G03730.1	VIT_07s0005g01380.t01	AT2G47430.1	9560288
AT5G03730.1	VIT_05s0049g00090.t01	AT3G23150.1	12177468

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc09g009090.2.1	Tomato	cytosol	70.68	72.28
KRH67846	Soybean	cytosol	67.52	71.36
KRG96132	Soybean	cytosol	67.06	71.04
CDY10360	Canola	cytosol	60.63	70.8
PGSC0003DMT400021612	Potato	cytosol	65.3	70.58
KRH20027	Soybean	cytosol	68.93	70.57
KRH32650	Soybean	cytosol	68.81	70.45
CDX70289	Canola	cytosol	60.63	69.48
CDX80884	Canola	cytosol	64.14	69.14
Solyc10g085570.1.1	Tomato	cytosol	64.02	69.1
Bra005778.1-P	Field mustard	cytosol	64.02	68.93
CDY11267	Canola	cytosol	63.9	68.72
Bra009514.1-P	Field mustard	plastid	60.4	67.85
AT5G03730.1	Thale cress	cytosol	64.95	67.72
Solyc10g083610.1.1	Tomato	cytosol	63.9	65.98
GSMUA_Achr8P07600_001	Banana	cytosol	60.86	62.25
VIT_13s0074g00430.t01	Wine grape	cytosol	54.32	61.35
Os09t0566550-01	Rice	cytosol, plastid	52.69	60.05
GSMUA_Achr11P...	Banana	cytosol, plastid	53.74	59.28
OQU89015	Sorghum	cytosol	52.22	58.51
GSMUA_Achr11P...	Banana	cytosol	54.56	58.3
TraesCS4D01G010200.1	Wheat	plastid	52.22	58.05
Zm00001d005348_P001	Maize	cytosol	52.1	58.0
TraesCS4B01G012100.1	Wheat	plastid	52.22	57.9
HORVU4Hr1G001850.1	Barley	plastid	52.22	57.83
TraesCS4A01G302000.1	Wheat	plastid	52.22	57.83
Os02t0527600-01	Rice	cytosol	52.22	57.23
KXG30326	Sorghum	cytosol, plastid	51.99	55.35
Zm00001d016675_P001	Maize	cytosol, plastid	51.52	55.12
VIT_18s0001g07700.t01	Wine grape	cytosol	43.81	41.44
VIT_04s0008g01310.t01	Wine grape	cytosol, mitochondrion	31.78	29.76
VIT_17s0000g02540.t01	Wine grape	cytosol	35.28	29.24
VIT_14s0030g01440.t01	Wine grape	cytosol, plastid	33.64	29.21
VIT_12s0028g02130.t01	Wine grape	cytosol	25.0	26.19
VIT_02s0025g04110.t01	Wine grape	cytosol	18.81	25.8
VIT_05s0077g00920.t01	Wine grape	cytosol	22.78	25.29
VIT_19s0085g00550.t01	Wine grape	cytosol	20.44	14.97
VIT_05s0051g00660.t01	Wine grape	cytosol	19.04	13.39
VIT_11s0052g01480.t01	Wine grape	cytosol	17.76	13.38
VIT_01s0011g01490.t01	Wine grape	cytosol	19.16	13.25
VIT_11s0016g04880.t01	Wine grape	mitochondrion	14.37	12.05
VIT_11s0118g00790.t01	Wine grape	cytosol	19.28	11.58

Protein Annotations

KEGG:04150+2.7.11.1	KEGG:04151+2.7.11.1	KEGG:04714+2.7.11.1	KEGG:04926+2.7.11.1	KEGG:05165+2.7.11.1	Gene3D:1.10.510.10
EntrezGene:100240856	wikigene:100240856	MapMan:18.4.1.30	Gene3D:3.30.200.20	ProteinID:CCB55399	ProteinID:CCB55399.1
InterPro:CTR1	UniProt:F6HKH7	EMBL:FN595991	GO:GO:0000166	GO:GO:0001666	GO:GO:0003674
GO:GO:0003824	GO:GO:0004672	GO:GO:0004674	GO:GO:0004871	GO:GO:0005488	GO:GO:0005524
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005783	GO:GO:0005789
GO:GO:0006464	GO:GO:0006468	GO:GO:0006629	GO:GO:0006950	GO:GO:0007154	GO:GO:0007165
GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009628	GO:GO:0009686
GO:GO:0009719	GO:GO:0009723	GO:GO:0009744	GO:GO:0009750	GO:GO:0009791	GO:GO:0009987
GO:GO:0016020	GO:GO:0016301	GO:GO:0016740	GO:GO:0019538	GO:GO:0035556	GO:GO:0046777
GO:GO:0048510	GO:GO:0071281	GO:GO:2000035	GO:GO:2000069	InterPro:IPR000719	InterPro:Kinase-like_dom_sf
EntrezGene:LOC100240856	wikigene:LOC100240856	PFAM:PF07714	PFAM:PF14381	PRINTS:PR00109	ScanProsite:PS00107
ScanProsite:PS00108	PFscan:PS50011	PANTHER:PTHR44329	PANTHER:PTHR44329:SF1	InterPro:Prot_kinase_dom	InterPro:Protein_kinase_ATP_BS
SMART:SM00220	SUPFAM:SSF56112	InterPro:Ser-Thr/Tyr_kinase_cat_dom	InterPro:Ser/Thr_kinase_AS	TIGR:TC59591	TIGR:TC66945
UniParc:UPI0002109E4C	ArrayExpress:VIT_08s0007g03910	EnsemblPlantsGene:VIT_08s0007g03910	EnsemblPlants:VIT_08s0007g03910.t01	unigene:Vvi.26299	unigene:Vvi.8844
RefSeq:XP_002277360	RefSeq:XP_002277360.2	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr8:-:17882576..17901834

Molecular Weight (calculated)

94490.3 Da

IEP (calculated)

6.297

GRAVY (calculated)

-0.354

Length

856 amino acids

Sequence
(BLAST)

001: MPGKRSNYSL LSQFPDDQFV GGAAGNQPPL YESLSGEKSK GKGFDWDGGD LRNRIGNLFT TSIGLQRQSS GSSFGESTLS GEYYVPTMSM AASSDFDAFG
101: DVFKVGGGGG AELRAKAVTG TGDSSSSKSW AQQTEESYQL QLALALRLSS EATCADDPNF LDPVPDDSAS RSLSSSGSSV EAMSHRFWVS GCLSYFDKVP
201: DGFYLIHGMD PYVWTVCNDL RENGRIPSIE SLKHAEPSAD SPIEVVLIDR RTDPTLKELQ NKVHGISCSC MTTKEVVDQL AKLVCNCMGG AASTGEDDFV
301: SIWRECSDDQ KDCLGSIVVP IGSLSFGLCR HRALLFKVLA DTIDLRCRIA KGCKYCTRDD ASSCLVRVGP DREFLVDLVG KPGCLCEPDS LLNGPASISI
401: SSPLRFPRSK PVETNIDFRS LAKQYFSECQ SLNLVFEDTS VGVIVDEADG GDSMYPKKFD RKCTDRTHLV PISRNRGETP QLPMPPKVAW PSAHDQDSQL
501: FKSCNPYQSS ISPTDAVKDP IPPKRIPLTG HGDVQPSLAL SDLRGDTIKD MRFTDGGQLY PNKPCKELSL DVEDLDIPWS DLVLKERIGA GSFGTVHRAD
601: WNGSDVAVKV LMEQDFHAER FKEFLREVSI MKRLRHPNIV LFMGAVTQPP NLSIVTEYLS RGSLYRLLHK PGAREMLDER RRLSMAYDVA KGMNYLHKRN
701: PPIVHRDLKS PNLLVDKKYT VKVCDFGLSR FKANTFLSSK SAAGTPEWMA PEVLRDEASN EKSDIYSFGI ILWELATLQQ PWSNLNPAQV VAAVGFKGKR
801: LEIPRDLNPQ VASIIEACWA NEPWKRPSFF NIMESLKPLI KPPTPQPVRA DRPLLT

Best Arabidopsis Sequence Match ( AT5G03730.2 )
(BLAST)

001: MEMPGRRSNY TLLSQFSDDQ VSVSVTGAPP PHYDSLSSEN RSNHNSGNTG KAKAERGGFD WDPSGGGGGD HRLNNQPNRV GNNMYASSLG LQRQSSGSSF
101: GESSLSGDYY MPTLSAAANE IESVGFPQDD GFRLGFGGGG GDLRIQMAAD SAGGSSSGKS WAQQTEESYQ LQLALALRLS SEATCADDPN FLDPVPDESA
201: LRTSPSSAET VSHRFWVNGC LSYYDKVPDG FYMMNGLDPY IWTLCIDLHE SGRIPSIESL RAVDSGVDSS LEAIIVDRRS DPAFKELHNR VHDISCSCIT
301: TKEVVDQLAK LICNRMGGPV IMGEDELVPM WKECIDGLKE IFKVVVPIGS LSVGLCRHRA LLFKVLADII DLPCRIAKGC KYCNRDDAAS CLVRFGLDRE
401: YLVDLVGKPG HLWEPDSLLN GPSSISISSP LRFPRPKPVE PAVDFRLLAK QYFSDSQSLN LVFDPASDDM GFSMFHRQYD NPGGENDALA ENGGGSLPPS
501: ANMPPQNMMR ASNQIEAAPM NAPPISQPVP NRANRELGLD GDDMDIPWCD LNIKEKIGAG SFGTVHRAEW HGSDVAVKIL MEQDFHAERV NEFLREVAIM
601: KRLRHPNIVL FMGAVTQPPN LSIVTEYLSR GSLYRLLHKS GAREQLDERR RLSMAYDVAK GMNYLHNRNP PIVHRDLKSP NLLVDKKYTV KVCDFGLSRL
701: KASTFLSSKS AAGTPEWMAP EVLRDEPSNE KSDVYSFGVI LWELATLQQP WGNLNPAQVV AAVGFKCKRL EIPRNLNPQV AAIIEGCWTN EPWKRPSFAT
801: IMDLLRPLIK SAVPPPNRSD L

Arabidopsis Description

CTR1Serine/threonine-protein kinase CTR1 [Source:UniProtKB/Swiss-Prot;Acc:Q05609]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.