Factsheet for VIT_17s0000g02540.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_02s0154g00410.t01
VIT_04s0069g00760.t01
VIT_05s0020g01710.t01
VIT_15s0024g00040.t01
VIT_17s0000g02360.t01
VIT_17s0000g02390.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G73660.1	VIT_15s0024g00040.t01	AT1G61520.1	24320620
AT1G73660.1	VIT_17s0000g02360.t01	AT4G08850.1	24320620
AT1G73660.1	VIT_17s0000g02390.t01	AT4G08850.1	24320620
AT1G73660.1	VIT_02s0154g00410.t01	AT4G17250.1	24320620
AT1G73660.1	VIT_04s0069g00760.t01	AT4G31670.1	24320620
AT1G73660.1	VIT_05s0020g01710.t01	AT5G18580.1	24320620

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH60519	Soybean	cytosol, plastid	73.28	74.51
KRH41805	Soybean	cytosol, plastid	72.02	73.16
Solyc06g068980.2.1	Tomato	nucleus	69.41	72.5
Solyc03g119140.2.1	Tomato	extracellular	70.47	70.61
KRH48620	Soybean	cytosol, plastid	69.99	70.47
KRH39096	Soybean	cytosol, plastid	69.02	69.77
PGSC0003DMT400074057	Potato	cytosol, plastid	60.41	68.8
Bra015976.1-P	Field mustard	cytosol	61.47	66.01
CDX96491	Canola	cytosol	61.47	65.53
Bra025927.1-P	Field mustard	cytosol	62.73	65.26
CDY26183	Canola	cytosol	62.73	65.26
AT1G18160.1	Thale cress	cytosol	62.15	64.72
CDY19193	Canola	cytosol	62.44	64.69
CDX72999	Canola	cytosol	60.99	64.15
AT1G73660.1	Thale cress	cytosol	63.41	63.59
GSMUA_Achr10P...	Banana	cytosol	55.18	62.36
Os06t0232100-02	Rice	plasma membrane	35.14	60.7
HORVU7Hr1G038650.1	Barley	cytosol, plastid	51.79	50.38
TraesCS7D01G191400.1	Wheat	cytosol	51.69	50.19
TraesCS7A01G190300.1	Wheat	cytosol	51.6	50.09
TraesCS7B01G095300.2	Wheat	cytosol, plastid	51.4	50.0
Zm00001d044814_P002	Maize	cytosol, plastid	52.86	49.77
KXG19659	Sorghum	cytosol, plastid	52.08	49.68
Os02t0743500-02	Rice	plasma membrane	53.24	49.51
TraesCS6D01G287700.1	Wheat	cytosol	52.86	49.23
HORVU6Hr1G076070.3	Barley	cytosol	52.66	49.14
TraesCS6A01G308500.1	Wheat	cytosol	52.86	49.1
TraesCS6B01G337200.1	Wheat	cytosol	52.47	48.74
EES07274	Sorghum	cytosol	52.08	47.86
VIT_14s0030g01440.t01	Wine grape	cytosol, plastid	38.33	40.16
VIT_04s0008g01310.t01	Wine grape	cytosol, mitochondrion	35.14	39.72
Zm00001d018025_P001	Maize	cytosol	36.98	38.82
VIT_13s0074g00430.t01	Wine grape	cytosol	27.01	36.81
VIT_08s0007g03910.t01	Wine grape	cytosol	29.24	35.28
VIT_18s0001g07700.t01	Wine grape	cytosol	28.85	32.93
VIT_05s0077g00920.t01	Wine grape	cytosol	22.27	29.83
VIT_12s0028g02130.t01	Wine grape	cytosol	22.46	28.4
VIT_02s0025g04110.t01	Wine grape	cytosol	16.84	27.88
VIT_19s0085g00550.t01	Wine grape	cytosol	17.13	15.14
VIT_11s0052g01480.t01	Wine grape	cytosol	15.49	14.08
VIT_05s0051g00660.t01	Wine grape	cytosol	16.07	13.64
VIT_01s0011g01490.t01	Wine grape	cytosol	15.78	13.17
VIT_11s0016g04880.t01	Wine grape	mitochondrion	12.39	12.54
VIT_11s0118g00790.t01	Wine grape	cytosol	15.78	11.44

Protein Annotations

Gene3D:1.10.510.10	EntrezGene:100854850	wikigene:100854850	MapMan:18.4.1.30	Gene3D:3.30.200.20	ProteinID:CCB43274
ProteinID:CCB43274.1	ncoils:Coil	UniProt:F6GSK1	EMBL:FN594950	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0004672	GO:GO:0004871	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0006464	GO:GO:0006468	GO:GO:0007154	GO:GO:0007165
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016301	GO:GO:0016740	GO:GO:0019538
GO:GO:0035556	InterPro:IPR000719	InterPro:Kinase-like_dom_sf	EntrezGene:LOC100854850	wikigene:LOC100854850	PFAM:PF07714
PFAM:PF14381	PRINTS:PR00109	ScanProsite:PS00107	ScanProsite:PS00108	PFscan:PS50011	PANTHER:PTHR44741
PANTHER:PTHR44741:SF2	InterPro:Prot_kinase_dom	InterPro:Protein_kinase_ATP_BS	SMART:SM00220	SUPFAM:SSF56112	InterPro:Ser-Thr/Tyr_kinase_cat_dom
InterPro:Ser/Thr_kinase_AS	TIGR:TC60271	UniParc:UPI000198502E	ArrayExpress:VIT_17s0000g02540	EnsemblPlantsGene:VIT_17s0000g02540	EnsemblPlants:VIT_17s0000g02540.t01
RefSeq:XP_003634285	RefSeq:XP_003634285.1	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr17:-:2321847..2341848

Molecular Weight (calculated)

112429.0 Da

IEP (calculated)

5.112

GRAVY (calculated)

-0.347

Length

1033 amino acids

Sequence
(BLAST)

0001: MKNILKKLHI VSNQTEDVEG STSSRGSKTH DGSSPDRLLH SRPHHNSEHK PFSGLSNWLN SVANRHSPSP PLSSNVTRVE RSEPSDSMSS CGLDVVSDAV
0101: RRDSGSSNSR DPDIEEEYQI QLALELSARE DPEAVQIEAV KQISLGSCAP ENTPAEIVAY RYWNYNALSY DDKILDGFYD LYGILMESTS QKMPSLVDLQ
0201: GTPLSDCVTW EAVLVNRAAD ANLLKLEQEA LVMAVKSRSE SPVFVGSDLV QRLAALVAAN MGGPVGDPVN MSRAWQSLSY SLKATLGSMV LPLGSLTIGL
0301: ARHRALLFKV LADSVGIPCR LVKGQQYTGS DDVAMNFVKI EDGREYIVDL MADPGTLIPS DAAGSHIEYD DSIFSASTLS REIDSSYIAS SSSGVVRPYL
0401: SAVGNESDDR GELTACANLP RPSKDSLNAE QTLLRALPSR PSHPYMHGRS PSWTEGVSSP AVRRMKVKDV SQYMIDAAKE NPQLAQKLHD VLLESGVVAP
0501: PNLFTEIYPE HIDVSIVEAK SPTEDKDENE KRPVIRKIKD QDDLGPIGFL PPLPYHGMQP RVSPCVQPDL KPVEGLGFNN LLDFKEVTGQ SVSSQSEVNP
0601: VKYVKNVPVA AAAAAAAVVA SSMVVAAAKS TADPNLELPV AAAATAAAAV VATTAAVGKQ YENLETGVHS PSGAAECFNQ TDGMQSGGDA DGAGYEPHGS
0701: GNREHDASGT NPEGERTSDR SADSTKSDVA LDDVADCEIP WDEIALGERI GLGSYGEVYR GDWHGTEVAV KKFLDQDISG ESLDEFRSEV RIMKRLRHPN
0801: VVLFMGAVTR VPNLSIVTEF LPRGSLYRLI HRPNNQLDER RRLRMALDAA RGMNYLHNCT PVIVHRDLKS PNLLVDKNWV VKVCDFGLSR MKHSTFLSSR
0901: STAGTAEWMA PEVLRNEPSD EKCDVFSFGV ILWELSTLQQ PWGGMNPMQV VGAVGFQHRR LDIPDDMDPV VADIIRRCWH TNPKMRPTFA EIMATLKPLQ
1001: KPITSSQVPR PSAAISSGQE RVQPSRAAEE PAE

Best Arabidopsis Sequence Match ( AT1G18160.1 )
(BLAST)

001: MKMNMKKFLK KLRITPNQRD DGEGSVSNRS NKSSDAEPSP SDSLRSQDNS EFKPFLGLSN WLSSVTHRKS PSSSNATNSK EDDTTMEHGG PVGSESGMQG
101: LGSSSNSKDP EVEEEYQIQL ALELSAREDP EAAQIEAMKQ FSLGSRPSAP ENTPAELMAY RYWNYNCLGY DDKIVDGFYD LCGVMNESSL KRIPPLVDLQ
201: GTLVSDGVTW DAVLVNSSKD SNLLRLEQMA LDIAAKSKSA SSSGFVNSEL VRQLAVLVAD YMGGPVLDPD STLRAWWSLS YSLKATLRSM VLPLGSLTIG
301: LARHRALLFK VLCDSVGVPC RIVKGQQYTG SDDVAMNSIK TDDGREYIVD LMGDPGTLIP ADAAGLQMDF DDSVYSASPR DVDSSHVASS SSGVESSIEE
401: HTESWSAEHR SRTKGSREEN QSAGGGDLMI PNIREAVGSQ KAPVQHLSSK PTHSFTHARS PSWTEGVSSP AGRRMKVKDV SQYMIDAAKE NPQLAQKLHD
501: VLLESGVVAP RNLFSEVYSE SMEATGEIKS VAESNDEKGK DFGTIQQGRN QSNLGPVRFL PPLPRPQSKA ITHDLREHSG SGLGHLSEHC NIDGHSDSSH
601: SETSTDYPRN VPVAVAAAAV VASSMVVAAA KSANSDSSTL ELSAAAAAAV MATAAAVSRQ FELDSLSNGD AGSGGLHGVD SGGERISDRS IGNESSKSDA
701: AIDDVAECEI LWEEITVAER IGLGSYGEVY RGDWHGTAVA VKKFIDQDIT GEALEEFRSE VRMMRRLRHP NIVLFMGAVT RPPNLSIVTE FLPRGSLYRL
801: IHRPNNQLDE RKRLRMALDA ARGMNYLHSC NPVIVHRDLK SPNLLVDKNW VVKVCDFGLS RMKVSTYLSS KSTAGTAEWM APEVLRNEPA DEKCDVYSYG
901: VILWELFTLQ QPWGKMNPMQ VVGAVGFQHR RLDIPEFVDP GIADIIRKCW QTDPRLRPSF GEIMDSLKQL QKPIQRAAVP SSSALTTDEQ EQ

Arabidopsis Description

Protein kinase superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4IAN2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.