Factsheet for Solyc06g068980.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
plastid 3
cytosol 2
endoplasmic reticulum 1

Predictors

GFP

MS/MS

Papers

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g067500.2.1
Solyc04g074000.2.1
Solyc04g074020.2.1
Solyc04g074030.2.1
Solyc04g074050.2.1
Solyc08g069050.2.1
Solyc08g078770.1.1
Solyc08g078780.2.1
Solyc10g007690.2.1
Solyc12g011280.1.1
Solyc12g096430.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G73660.1	Solyc10g007690.2.1	AT1G61520.1	24320620
AT1G73660.1	Solyc12g011280.1.1	AT1G61520.1	24320620
AT1G73660.1	Solyc04g074000.2.1	AT4G08850.1	24320620
AT1G73660.1	Solyc04g074020.2.1	AT4G08850.1	24320620
AT1G73660.1	Solyc04g074030.2.1	AT4G08850.1	24320620
AT1G73660.1	Solyc04g074050.2.1	AT4G08850.1	24320620
AT1G73660.1	Solyc08g078770.1.1	AT4G17250.1	24320620
AT1G73660.1	Solyc08g078780.2.1	AT4G17250.1	24320620
AT1G73660.1	Solyc08g069050.2.1	AT4G31670.1	24320620
AT1G73660.1	Solyc12g096430.1.1	AT4G31670.1	24320620
AT1G73660.1	Solyc01g067500.2.1	AT5G18580.1	24320620

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400074057	Potato	cytosol, plastid	86.35	94.16
Solyc03g119140.2.1	Tomato	extracellular	76.54	73.42
VIT_17s0000g02540.t01	Wine grape	cytosol	72.5	69.41
KRH60519	Soybean	cytosol, plastid	69.26	67.42
KRH41805	Soybean	cytosol, plastid	68.05	66.17
KRH48620	Soybean	cytosol, plastid	67.64	65.2
KRH39096	Soybean	cytosol, plastid	67.24	65.07
Bra015976.1-P	Field mustard	cytosol	62.39	64.14
CDX96491	Canola	cytosol	62.39	63.67
AT1G73660.1	Thale cress	cytosol	65.22	62.62
CDX72999	Canola	cytosol	61.98	62.42
AT1G18160.1	Thale cress	cytosol	61.98	61.79
CDY26183	Canola	cytosol	61.88	61.63
Bra025927.1-P	Field mustard	cytosol	61.88	61.63
CDY19193	Canola	cytosol	61.78	61.28
GSMUA_Achr10P...	Banana	cytosol	55.11	59.63
Os06t0232100-02	Rice	plasma membrane	33.47	55.35
HORVU7Hr1G038650.1	Barley	cytosol, plastid	51.77	48.21
TraesCS7B01G095300.2	Wheat	cytosol, plastid	51.77	48.21
TraesCS7D01G191400.1	Wheat	cytosol	51.77	48.12
TraesCS7A01G190300.1	Wheat	cytosol	51.57	47.93
Os02t0743500-02	Rice	plasma membrane	53.59	47.7
Zm00001d044814_P002	Maize	cytosol, plastid	52.68	47.49
KXG19659	Sorghum	cytosol, plastid	51.57	47.09
TraesCS6A01G308500.1	Wheat	cytosol	52.48	46.67
TraesCS6D01G287700.1	Wheat	cytosol	52.07	46.44
HORVU6Hr1G076070.3	Barley	cytosol	51.87	46.34
TraesCS6B01G337200.1	Wheat	cytosol	51.97	46.22
EES07274	Sorghum	cytosol	52.48	46.17
Solyc08g065250.2.1	Tomato	cytosol	33.47	44.37
Solyc09g009090.2.1	Tomato	cytosol	32.15	37.99
Solyc01g097980.2.1	Tomato	cytosol, plastid	37.41	37.68
Solyc12g013980.1.1	Tomato	cytosol	14.76	37.34
Solyc10g085570.1.1	Tomato	cytosol	29.93	37.33
Solyc10g083610.1.1	Tomato	cytosol	31.04	37.03
Zm00001d018025_P001	Maize	cytosol	36.3	36.48
Solyc04g076480.2.1	Tomato	cytosol	30.33	31.32
Solyc01g059860.2.1	Tomato	cytosol	23.56	30.66
Solyc12g099250.1.1	Tomato	cytosol	23.26	30.03
Solyc02g076780.2.1	Tomato	cytosol	22.14	29.55
Solyc08g007910.2.1	Tomato	nucleus	21.13	28.91
Solyc07g055130.2.1	Tomato	cytosol	22.95	27.92
Solyc08g080460.1.1	Tomato	plastid	20.02	26.19
Solyc12g013970.1.1	Tomato	nucleus	7.48	20.39
Solyc07g006760.2.1	Tomato	cytosol	16.08	14.68
Solyc09g091460.2.1	Tomato	nucleus	17.49	14.01
Solyc07g007140.2.1	Tomato	cytosol	16.48	11.52
Solyc02g031860.2.1	Tomato	cytosol	13.35	10.81
Solyc02g031910.2.1	Tomato	cytosol	13.25	10.55

Protein Annotations

Gene3D:1.10.510.10	MapMan:18.4.1.30	Gene3D:3.30.200.20	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0004672	GO:GO:0004871	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0006464	GO:GO:0006468	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016301	GO:GO:0016740	GO:GO:0019538	GO:GO:0035556
InterPro:IPR000719	UniProt:K4C871	InterPro:Kinase-like_dom_sf	PFAM:PF07714	PFAM:PF14381	PRINTS:PR00109
ScanProsite:PS00107	ScanProsite:PS00108	PFscan:PS50011	PANTHER:PTHR44741	PANTHER:PTHR44741:SF2	InterPro:Prot_kinase_dom
InterPro:Protein_kinase_ATP_BS	SMART:SM00220	SUPFAM:SSF56112	InterPro:Ser-Thr/Tyr_kinase_cat_dom	InterPro:Ser/Thr_kinase_AS	EnsemblPlantsGene:Solyc06g068980.2
EnsemblPlants:Solyc06g068980.2.1	UniParc:UPI0002766778	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr6:-:42790122..42799771

Molecular Weight (calculated)

107859.0 Da

IEP (calculated)

6.037

GRAVY (calculated)

-0.461

Length

989 amino acids

Sequence
(BLAST)

001: MKNFLKKLHI GSNQSEDSEG STSSSRSKKL TDVSSPEKHS SSRSYHGSDN KPFSAISGWL NSVTNRHSPS PPSSSNVNRG NRMEHSDSVS IGGTDAVLDA
101: LQRDSESSSS RDPGVEEEYQ IQLALELSAK EDPEAVQIEA VKQISLGSSA PENAPAEVVA YRYWNYNALS YDDKILDGFY DLYGVLMESN SSKMPSLIDL
201: QRTEVSDHIS WEAILISKAA DSKLLKLEQR ALEIAVEERS KLMDFSASSL VHELAVLVSD HMGGPVVDPE SMLLAWRSIS YNLKATLGSM VLPLGSLTIG
301: LARHRALLFK VLADSVGIPC RLVKGKQYTG SDDVAMNYVK IDGREYIVDL MAAPGTLIPS DTSGVHGDYE ESILSISPSS KDVDSHPGSN SSGIASSLGD
401: HSDYGTADKR SRFAESTSAG NESPSSGNPE LQETSSRAGH ARSAFTHARS PSWTEGVSSP AAHKMKVKDA SQYMIDAAKE NPQLAQKLHT VLLESGVIAP
501: PNLFAEIYPE QLDVSHIEGK SRLEERDEFQ KVRGQSDKNR ARFLPPLPYH SPYSKGNARG SLEPQPNVRE VDEQQVSRQS EVAPPKHMKK VPVAAAAAAA
601: AAAVASSMVV VAAKTNPHGD LPVAAAATAT AAAVVATTAA VSKQYEAQGD CERADGDADT AVYEQQGCGH QEHEAAGANS EGERMSDKST SNDSTKSDVT
701: LDDVADCEIP WEDIALGERI GLGSYGEVYR GEWHGTEVAV KKFLDQDITG ESLEEFRSEV RIMKRLRHPN VVLFMGAVTR SPHLSIVTEF LHRGSLYRLI
801: HRPNNQLDER RRLRMALDAA RGMNYLHNCT PMIVHRDLKS PNLLVDKNWV VKVCDFGLSR MKHSTFLSSR STAGTAEWMA PEVLRNEPSN EKCDVYSFGV
901: ILWELCTLQQ PWGGMNPMQV VGAVGFQHRR LDIPDDTDPA IADIIRKCWQ TDPKLRPSFT EIMAALKPLQ KPITSSHAPK PPVARGQPS

Best Arabidopsis Sequence Match ( AT1G73660.1 )
(BLAST)

0001: MKVKEETLKN LGDGVVLRPV DHCSSIWSMK MNMKNFLKKL HISPNQSDEA EGSISTTKSN HHKSIDVSSS SSPRSHHSNS PEIKPFSGLS NWLSSVGHRK
0101: IPSPPNSFNA KNRAATVDDT VVVNGSEHVD LGSKDPAVEE ENQIQLALEL SAREDPEATQ IEAIKQFSLG SCAPENSPAE LIAYRYWNYN CLGYDDKILD
0201: GFYDLYGVLN ASSAERIPPL LDLQGTPVSD GVTWEAVLVN RSGDSNLLRL EQMALDIAAK SRSVSSSGFV NSELVRKLAI LVGDYMGGPV VHPESMLRAW
0301: RSLSYSLKAT LGSMVLPLGS LTIGLARHRA LLFKVLCDSV GVPCRIVKGQ QYTGSEDVAM NFIKADDGRE YIVDLMGDPG TLIPADAAGL QIDYDESAYS
0401: ASPGDNDSIH VASSSNGIES SYEENTEFRT GEHRSSTKSS GERNQSGGGG DLIVHPNISR EDVKNQKKVE KAPFQNLSSR PIHSFTHMRS PSWTEGVSSP
0501: AAQRMKVKDV SQYMIDAAKE NPRLAQKLHD VLLESGVVAP PNLFSEVYPQ QLEATVESKN STEAKKERGK DLETTQEGRH QNGFGPVRFL PPLPRVQSKT
0601: NAHDQRDNGK VVSQSDSSHS EASSTEYART VPAAVAAAAV VASSMVAAAA AKSANSDSSP IELPAAAAAT ATAAAVVATA AAVSRQLELG SNSDGDDGSG
0701: GHEPQGSGDS NHGPNSGGER ISDKSIGNES SKSDCDDVSD CEILWEEITV GERIGLGSYG EVYRGDWHGT EVAVKKFLDQ DLTGEALEEF RSEVRIMKKL
0801: RHPNIVLFMG AVTRPPNLSI VTEFLPRGSL YRLIHRPNNQ LDERRRLRMA LDAARGMNYL HSCNPMIVHR DLKSPNLLVD KNWVVKVCDF GLSRMKHSTY
0901: LSSKSTAGTA EWMAPEVLRN EPADEKCDVY SYGVILWELF TLQQPWGKMN PMQVVGAVGF QHRRLDIPDF VDPAIADLIS KCWQTDSKLR PSFAEIMASL
1001: KRLQKPVTGS NIPRPVPSSS SLPTEHEQKD

Arabidopsis Description

SIS8Probable serine/threonine-protein kinase SIS8 [Source:UniProtKB/Swiss-Prot;Acc:Q9C9U5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.