Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G43560.1 | KRH42680 | AT1G27320.1 | 18642946 |
| AT5G43560.1 | KRH58780 | AT1G27320.1 | 18642946 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH34524 | Soybean | nucleus | 93.07 | 92.99 |
| KRH31732 | Soybean | nucleus | 80.0 | 80.07 |
| PGSC0003DMT400042094 | Potato | cytosol | 26.75 | 74.94 |
| KRG90366 | Soybean | endoplasmic reticulum, plasma membrane | 79.47 | 73.78 |
| VIT_05s0020g04980.t01 | Wine grape | nucleus | 69.39 | 69.02 |
| Solyc06g053740.2.1 | Tomato | cytosol | 25.0 | 68.51 |
| AT5G52330.3 | Thale cress | cytosol | 23.16 | 66.5 |
| OQU79503 | Sorghum | nucleus | 26.23 | 66.0 |
| CDX86642 | Canola | nucleus | 50.7 | 55.31 |
| CDY10066 | Canola | nucleus | 48.86 | 54.93 |
| CDY32539 | Canola | nucleus | 48.16 | 54.57 |
| CDX89828 | Canola | nucleus | 50.79 | 54.57 |
| Bra015302.1-P | Field mustard | nucleus | 50.53 | 54.34 |
| CDY18218 | Canola | nucleus | 50.18 | 54.06 |
| Bra032518.1-P | Field mustard | nucleus | 46.75 | 53.62 |
| AT1G04300.3 | Thale cress | nucleus | 50.88 | 53.6 |
| AT5G43560.1 | Thale cress | nucleus | 49.39 | 53.36 |
| GSMUA_Achr2P12590_001 | Banana | nucleus | 49.12 | 52.04 |
| Os05t0508700-01 | Rice | nucleus | 33.25 | 49.16 |
| TraesCS5D01G072000.1 | Wheat | nucleus | 45.61 | 46.3 |
| TraesCS5B01G071600.1 | Wheat | nucleus | 45.44 | 46.17 |
| HORVU5Hr1G016190.3 | Barley | nucleus | 45.35 | 46.04 |
| TraesCS5A01G060400.1 | Wheat | nucleus | 45.26 | 45.95 |
| EES16279 | Sorghum | nucleus | 44.3 | 45.01 |
| PGSC0003DMT400042093 | Potato | nucleus | 23.95 | 40.87 |
| GSMUA_Achr5P03190_001 | Banana | nucleus | 50.61 | 40.86 |
| EES01550 | Sorghum | nucleus | 40.09 | 37.77 |
| KXG22306 | Sorghum | nucleus | 41.05 | 36.34 |
| Os01t0775300-01 | Rice | cytosol, mitochondrion, nucleus | 41.14 | 35.99 |
| TraesCS3D01G310000.1 | Wheat | nucleus | 40.53 | 35.93 |
| TraesCS3B01G343300.2 | Wheat | nucleus | 40.7 | 35.18 |
| TraesCS3A01G321300.2 | Wheat | nucleus | 40.44 | 35.06 |
| TraesCS1B01G339200.1 | Wheat | nucleus | 41.93 | 34.49 |
| TraesCS1D01G327700.1 | Wheat | nucleus | 41.84 | 34.37 |
| TraesCS1A01G325900.1 | Wheat | nucleus | 41.84 | 34.37 |
| HORVU3Hr1G075800.5 | Barley | cytosol, nucleus, plastid | 40.61 | 33.84 |
| HORVU1Hr1G078170.6 | Barley | cytosol | 41.49 | 32.89 |
| Os12t0597200-01 | Rice | cytosol, nucleus, plastid | 7.89 | 29.13 |
| KRG98484 | Soybean | cytosol | 2.72 | 27.93 |
| KRG90150 | Soybean | cytosol | 4.12 | 22.17 |
| KRH17929 | Soybean | cytosol | 8.6 | 22.12 |
| KRG89898 | Soybean | cytosol | 7.28 | 21.96 |
| KRG96334 | Soybean | cytosol | 6.67 | 21.84 |
| KRH68070 | Soybean | cytosol | 6.84 | 20.69 |
| KRH46376 | Soybean | cytosol | 5.96 | 20.18 |
| KRH71763 | Soybean | cytosol | 4.56 | 20.08 |
| KRG96335 | Soybean | cytosol | 6.67 | 20.05 |
| KRH32747 | Soybean | cytosol | 6.32 | 19.67 |
| KRH71764 | Soybean | cytosol | 6.14 | 19.44 |
| KRH32941 | Soybean | cytosol | 4.82 | 19.16 |
| KRG96333 | Soybean | cytosol | 6.75 | 18.78 |
| KRH73403 | Soybean | nucleus | 16.23 | 16.55 |
| KRH14719 | Soybean | nucleus | 16.23 | 16.55 |
| KRG98483 | Soybean | cytosol | 3.42 | 15.73 |
| KRH33402 | Soybean | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 15.53 | 15.51 |
| KRG89895 | Soybean | nucleus | 9.12 | 13.89 |
| KRH17931 | Soybean | mitochondrion, nucleus | 8.16 | 13.74 |
| KRH71762 | Soybean | cytosol | 2.19 | 13.16 |
| KRG90152 | Soybean | cytosol | 8.51 | 12.37 |
| KRG90154 | Soybean | cytosol | 1.93 | 12.15 |
| KRH61745 | Soybean | nucleus | 8.6 | 10.01 |
| KRH33457 | Soybean | cytosol | 1.23 | 9.59 |
| KRH52412 | Soybean | nucleus | 12.19 | 8.28 |
| KRH16103 | Soybean | nucleus | 7.37 | 7.78 |
| KRH61900 | Soybean | cytosol, mitochondrion, nucleus | 7.19 | 7.48 |
| KRH52561 | Soybean | cytosol | 7.19 | 7.34 |
| KRH04994 | Soybean | nucleus | 6.93 | 7.31 |
| KRH61744 | Soybean | cytosol | 3.33 | 5.93 |
Protein Annotations
| EntrezGene:100818052 | Gene3D:2.60.210.10 | MapMan:22.5.1.6 | EMBL:ACUP02012736 | EnsemblPlantsGene:GLYMA_20G202100 | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005515 | UniProt:I1NI12 | InterPro:IPR002083 | InterPro:IPR008974 | ProteinID:KRG92286.1 |
| EnsemblPlants:KRG92287 | ProteinID:KRG92287 | ProteinID:KRG92287.1 | InterPro:MATH/TRAF_dom | PFAM:PF00917 | PFscan:PS50144 |
| PANTHER:PTHR45001 | SMART:SM00061 | SUPFAM:SSF49599 | InterPro:TRAF-like | UniParc:UPI000296746E | SEG:seg |
Description
hypothetical protein
Coordinates
chr20:-:43882760..43895285
Molecular Weight (calculated)
126344.0 Da
IEP (calculated)
6.553
GRAVY (calculated)
-0.683
Length
1140 amino acids
Sequence
(BLAST)
(BLAST)
0001: MAGTVSEESG VGKSVEGISN GQRCQSGEAL AEWRSSEQVE NGIASTSPPY WDTDDEDDGP KPLALYGRYT WKIEKFSQIT KRELRSSAFE VGGYKWYILI
0101: YPQGCDVCNH LSLFLCVANH DKLLPGWSHF AQFTIAVVNK DPKKSKYSDT LHRFWKKEHD WGWKKFMELS KVYDGFVDSS DNLIIKAQVQ VIREKSDRPF
0201: RCLDCQYRRE LVRVYLTNVE QICRRFVEER RSKLGKLIED KARWSSFFTF WREVDQTSRR RMSREKTDVI LKVVVKHFFI EKEVTSTLVM DSLYSGLKAL
0301: EGQTKSKKGR VKLLDAEEIP APIVHVEKDM FVLVDDVLLL LERAAIEPLP PKDEKCPQNR TKDGNSGEDF NKDSVERDER RLTELGRRTL EIFVLAHIFC
0401: NKIEIAYQEA VALKRQEELI REEEAAWQAE SDQKAKRGGE REKKSKKKQA KQKRNNQKGK DKEREERTAV SVTDKNQNNA VDEKNDSSME EAQAVSEKPD
0501: PMEDVSDVSD SVDGVAETLQ LDSEDRDASP VNWDTDASEV NPPTEARYNG IGSVSTIQNG TSEKRSSSVI DDSSSTCSTD SLPSVVMNDP HKGNCFSNYK
0601: VQKSPSRGKN QGKTSSNVGR LTIEIDSLPS GSAADAGDIN DESGNGKIGK SESEVAVISL QDRLKWAEQH VVRKEGEVLS LDKPGIKDLV ETKRSVDNES
0701: LQKEKISAVP SSPISPPRKL SPSVQVKLEH KTSSTVDPVH VRKTSSSGSQ QTDKDPSSPF TSASPVPVVS KTEIQKTSTA RLTERSVAQV PMMSRPSSAP
0801: LVPGPRPTAP VVSMVQTSPL LAHSVSATRL GPDPSPATHS HVPQSYRNAM MGNPVASTAA SLTHSSSSSS GVIPSPGYSQ PSSFVSSMFL SRSSDRLDTS
0901: AGQSCVPFTM ITRDVLQNGT QWIESSQRES SRSMHYDQPS GLYEVQNHDL YRPLHSRSLG NMSTAFSACT SGRQNQGLLV DEFPHLDIIN DLLDDEHGIG
1001: KTAKASSAFQ SLNSGPQLLN RQFTFPGDLG ADDDLGSSTS SCRLERSRSF QHDHRLQGGY GLSGGHYHSL RDYIPPVSGV PGVNGQVDGL IPNQWQVAGS
1101: DLLYLGMRNT ENDSYGYYPD YSNIACGVNG YTVFRPSSGP
0101: YPQGCDVCNH LSLFLCVANH DKLLPGWSHF AQFTIAVVNK DPKKSKYSDT LHRFWKKEHD WGWKKFMELS KVYDGFVDSS DNLIIKAQVQ VIREKSDRPF
0201: RCLDCQYRRE LVRVYLTNVE QICRRFVEER RSKLGKLIED KARWSSFFTF WREVDQTSRR RMSREKTDVI LKVVVKHFFI EKEVTSTLVM DSLYSGLKAL
0301: EGQTKSKKGR VKLLDAEEIP APIVHVEKDM FVLVDDVLLL LERAAIEPLP PKDEKCPQNR TKDGNSGEDF NKDSVERDER RLTELGRRTL EIFVLAHIFC
0401: NKIEIAYQEA VALKRQEELI REEEAAWQAE SDQKAKRGGE REKKSKKKQA KQKRNNQKGK DKEREERTAV SVTDKNQNNA VDEKNDSSME EAQAVSEKPD
0501: PMEDVSDVSD SVDGVAETLQ LDSEDRDASP VNWDTDASEV NPPTEARYNG IGSVSTIQNG TSEKRSSSVI DDSSSTCSTD SLPSVVMNDP HKGNCFSNYK
0601: VQKSPSRGKN QGKTSSNVGR LTIEIDSLPS GSAADAGDIN DESGNGKIGK SESEVAVISL QDRLKWAEQH VVRKEGEVLS LDKPGIKDLV ETKRSVDNES
0701: LQKEKISAVP SSPISPPRKL SPSVQVKLEH KTSSTVDPVH VRKTSSSGSQ QTDKDPSSPF TSASPVPVVS KTEIQKTSTA RLTERSVAQV PMMSRPSSAP
0801: LVPGPRPTAP VVSMVQTSPL LAHSVSATRL GPDPSPATHS HVPQSYRNAM MGNPVASTAA SLTHSSSSSS GVIPSPGYSQ PSSFVSSMFL SRSSDRLDTS
0901: AGQSCVPFTM ITRDVLQNGT QWIESSQRES SRSMHYDQPS GLYEVQNHDL YRPLHSRSLG NMSTAFSACT SGRQNQGLLV DEFPHLDIIN DLLDDEHGIG
1001: KTAKASSAFQ SLNSGPQLLN RQFTFPGDLG ADDDLGSSTS SCRLERSRSF QHDHRLQGGY GLSGGHYHSL RDYIPPVSGV PGVNGQVDGL IPNQWQVAGS
1101: DLLYLGMRNT ENDSYGYYPD YSNIACGVNG YTVFRPSSGP
0001: MAEAVDEDSG VGRSLEESSN GQHSQAGEAL SEWRSSGQVE NGTPSTSPSY WDIDDDDDYG LKPSELYGQY TWKIPKFSEI TKREHRSNVF EAGGYKWYIL
0101: IYPQGCDVCN HLSLFLCVAN YDKLLPGWSQ FAQFTISVLS QDLKKSKFSD TLHRFWKKEH DWGWKKFMEL PKLKDGFIDE SGCLTIEAKV QVIRERVDRP
0201: FRCLDCGYRR ELVRVYFQNV EQICRRFVEE KRSKLGRLIE DKARWTSFGV FWLGMDQNSR RRMCREKVDV ILKGVVKHFF VEKEVSSTLV MDSLYSGLKA
0301: LEGQTKNMKA RSRLLDAKQL PAPIVSVDKD MFVLVDDVLL LLERAALEPL PPKDEKGRQN RTKDGNDGEE VNKEADERDE RRLTELGRRT VEIFILSHIF
0401: STKIEVAHQE AIALKRQEEL IREEEEAWLA ETEQRAKRGA AEREKKSKKK QAKQKRNKNK GKDKRKEEKV SFATHAKDLE ENQNQNQNDE EEKDSVTEKA
0501: QSSAEKPDTL GDVSDISDSV DGSADILQPD LEDRDSSSVL WDTDALEIHP PSSEGSSRGR GISISTPNGI TEGKSHSTMD DSSSTCSNDS IRSGVTNGSY
0601: QGNSLNFRNQ KSPNKGKNQQ VKAMTDAHSL ASETDDQPST LGTDPKGQNY SSEASNVGES DWVVVSHIQE PEGSRNRIPV GRERKTVQSI VNSVDMDRPK
0701: EKSTAVLSSP RNVAKNPSPL TQTKPEKKSI STADGIPNRK VLATGPPSSS QVVLPSDIQS QTVGLRADMQ KLSAPKQPPA TTISRPSSAP IIPAMRPSPI
0801: TVSSSVQTTT SLPRSVSSAG RLGPDPSLHN QQTYTPQSYK NAIVGNSLGS SSSSFNHHPS SHGVVPTTLP SSSYSQAPTS SYQSSFPYSQ DGLLWTGRSP
0901: SSVNMGMYNN TYSPAVTSNR SLNHMDVQIA QQQAQSMMTD EFPHLDIIND LLEDEQCSNM VYNGSIFNPQ PQVFNGQYSS YHGELLSGGR TRSFGEEGLH
1001: YMARGPYGTD GMMPRQWQMT NMDLSLPAMR SNGMEDGTSS AANYHHSYFG LDASNPSFTS GINGYTEFRP SNGH
0101: IYPQGCDVCN HLSLFLCVAN YDKLLPGWSQ FAQFTISVLS QDLKKSKFSD TLHRFWKKEH DWGWKKFMEL PKLKDGFIDE SGCLTIEAKV QVIRERVDRP
0201: FRCLDCGYRR ELVRVYFQNV EQICRRFVEE KRSKLGRLIE DKARWTSFGV FWLGMDQNSR RRMCREKVDV ILKGVVKHFF VEKEVSSTLV MDSLYSGLKA
0301: LEGQTKNMKA RSRLLDAKQL PAPIVSVDKD MFVLVDDVLL LLERAALEPL PPKDEKGRQN RTKDGNDGEE VNKEADERDE RRLTELGRRT VEIFILSHIF
0401: STKIEVAHQE AIALKRQEEL IREEEEAWLA ETEQRAKRGA AEREKKSKKK QAKQKRNKNK GKDKRKEEKV SFATHAKDLE ENQNQNQNDE EEKDSVTEKA
0501: QSSAEKPDTL GDVSDISDSV DGSADILQPD LEDRDSSSVL WDTDALEIHP PSSEGSSRGR GISISTPNGI TEGKSHSTMD DSSSTCSNDS IRSGVTNGSY
0601: QGNSLNFRNQ KSPNKGKNQQ VKAMTDAHSL ASETDDQPST LGTDPKGQNY SSEASNVGES DWVVVSHIQE PEGSRNRIPV GRERKTVQSI VNSVDMDRPK
0701: EKSTAVLSSP RNVAKNPSPL TQTKPEKKSI STADGIPNRK VLATGPPSSS QVVLPSDIQS QTVGLRADMQ KLSAPKQPPA TTISRPSSAP IIPAMRPSPI
0801: TVSSSVQTTT SLPRSVSSAG RLGPDPSLHN QQTYTPQSYK NAIVGNSLGS SSSSFNHHPS SHGVVPTTLP SSSYSQAPTS SYQSSFPYSQ DGLLWTGRSP
0901: SSVNMGMYNN TYSPAVTSNR SLNHMDVQIA QQQAQSMMTD EFPHLDIIND LLEDEQCSNM VYNGSIFNPQ PQVFNGQYSS YHGELLSGGR TRSFGEEGLH
1001: YMARGPYGTD GMMPRQWQMT NMDLSLPAMR SNGMEDGTSS AANYHHSYFG LDASNPSFTS GINGYTEFRP SNGH
Arabidopsis Description
TRAF1BTNF receptor-associated factor homolog 1b [Source:UniProtKB/Swiss-Prot;Acc:A8MQL1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.