Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- plastid 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Solyc05g015610.2.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G43560.1 | Solyc05g015610.2.1 | AT1G27320.1 | 18642946 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc06g053740.2.1 | Tomato | cytosol | 26.72 | 70.91 |
| OQU79503 | Sorghum | nucleus | 26.9 | 65.56 |
| Solyc03g005430.2.1 | Tomato | nucleus | 67.21 | 64.58 |
| AT5G52330.3 | Thale cress | cytosol | 23.19 | 64.48 |
| Solyc06g053750.2.1 | Tomato | nucleus | 62.59 | 60.72 |
| VIT_05s0020g04980.t01 | Wine grape | nucleus | 62.14 | 59.86 |
| CDX86642 | Canola | nucleus | 44.47 | 46.99 |
| CDX89828 | Canola | nucleus | 45.02 | 46.84 |
| GSMUA_Achr2P12590_001 | Banana | nucleus | 45.65 | 46.84 |
| CDY32539 | Canola | nucleus | 42.57 | 46.72 |
| Bra015302.1-P | Field mustard | nucleus | 44.84 | 46.7 |
| AT1G04300.3 | Thale cress | nucleus | 45.65 | 46.58 |
| AT5G43560.1 | Thale cress | nucleus | 44.47 | 46.54 |
| CDY18218 | Canola | nucleus | 44.57 | 46.5 |
| CDY10066 | Canola | nucleus | 42.66 | 46.45 |
| Bra032518.1-P | Field mustard | nucleus | 41.12 | 45.67 |
| Os05t0508700-01 | Rice | nucleus | 31.16 | 44.62 |
| TraesCS5B01G071600.1 | Wheat | nucleus | 43.39 | 42.69 |
| TraesCS5A01G060400.1 | Wheat | nucleus | 43.39 | 42.65 |
| HORVU5Hr1G016190.3 | Barley | nucleus | 43.21 | 42.48 |
| TraesCS5D01G072000.1 | Wheat | nucleus | 43.21 | 42.48 |
| EES16279 | Sorghum | nucleus | 43.12 | 42.42 |
| GSMUA_Achr5P03190_001 | Banana | nucleus | 45.47 | 35.55 |
| EES01550 | Sorghum | nucleus | 38.04 | 34.71 |
| KXG22306 | Sorghum | nucleus | 39.67 | 34.01 |
| Os01t0775300-01 | Rice | cytosol, mitochondrion, nucleus | 39.31 | 33.31 |
| TraesCS1B01G339200.1 | Wheat | nucleus | 40.76 | 32.47 |
| TraesCS1A01G325900.1 | Wheat | nucleus | 40.58 | 32.28 |
| TraesCS1D01G327700.1 | Wheat | nucleus | 40.58 | 32.28 |
| TraesCS3D01G310000.1 | Wheat | nucleus | 37.5 | 32.19 |
| TraesCS3A01G321300.2 | Wheat | nucleus | 37.5 | 31.48 |
| TraesCS3B01G343300.2 | Wheat | nucleus | 37.5 | 31.39 |
| HORVU1Hr1G078170.6 | Barley | cytosol | 40.85 | 31.36 |
| HORVU3Hr1G075800.5 | Barley | cytosol, nucleus, plastid | 37.86 | 30.56 |
| Os12t0597200-01 | Rice | cytosol, nucleus, plastid | 7.97 | 28.48 |
| Solyc11g006320.1.1 | Tomato | cytosol | 15.58 | 15.4 |
| Solyc05g055090.2.1 | Tomato | cytosol | 15.49 | 15.28 |
| Solyc11g071700.1.1 | Tomato | cytosol, plastid | 15.22 | 15.12 |
| Solyc10g081610.1.1 | Tomato | cytosol, extracellular, nucleus | 14.95 | 14.71 |
| Solyc06g073820.1.1 | Tomato | cytosol | 14.22 | 13.83 |
| Solyc03g078390.2.1 | Tomato | nucleus | 7.43 | 7.52 |
| Solyc06g017970.2.1 | Tomato | nucleus | 10.96 | 7.16 |
| Solyc05g055100.1.1 | Tomato | endoplasmic reticulum | 4.44 | 6.93 |
Protein Annotations
| EnsemblPlants:Solyc09g089560.2.1 | EnsemblPlantsGene:Solyc09g089560.2 | Gene3D:2.60.210.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:IPR002083 | InterPro:IPR008974 | InterPro:MATH/TRAF_dom | InterPro:TRAF-like | ncoils:Coil | PANTHER:PTHR45001 |
| PFAM:PF00917 | PFscan:PS50144 | SEG:seg | SMART:SM00061 | SUPFAM:SSF49599 | UniParc:UPI000276C74F |
| UniProt:K4CVY3 | MapMan:22.5.1.6 | : | : | : | : |
Description
No Description!
Coordinates
chr9:-:69258262..69269925
Molecular Weight (calculated)
123241.0 Da
IEP (calculated)
8.269
GRAVY (calculated)
-0.745
Length
1104 amino acids
Sequence
(BLAST)
(BLAST)
0001: MASSASEEAG SARSLEGLSN GQRRCQSSEA LAEWRSLEQV ENGIPSTSPP YWDSDDDGDA GSKPSELYGK YTWKIDKFSQ INKRELRSNA FEVGGYKWYI
0101: LIYPQGCDVC NHLSLFLCVA NHDKLLPGWS HFAQFTIAVV NKDPKKSKYS DTLHRFWKNE HDWGWKKFME LSKVLEGFID ADTLIIKAQV QVIRERADRP
0201: FRCLDCQYRR ELVRVYLTNV EQICRRFMEV RRGKLGKLTE DKARWSSFCA FWLGMDQNSR HRMTQEKSHP ILKVVVKHFF IEKEVTSTIV MDSLYSGLKA
0301: IEGQTKGKKG KGKYLDAEEQ LVPIVRLDND MFVLVDDVLL LLERAALEPL PPKDEKGIHN RTKDGASGED FNKYSIERDE RRLTELGRRT IEIFVLTHIF
0401: SKIEVSYQEA VALKRQEELI LEEEAAWLAE TEQKAKKASD KEKKSKRKQG KQKKNNRKKK DKGRDGKTCI IEQEKAERDG CILDGNDYET EEPEAALEKP
0501: DMLENEISFC GLSGLSAAQN GISGRSPPVI DDSSSTCSTD SVPSVAMNAP YRGTSLNHKN QKSPSRLVNH RSKSTSSTTD WASEIHKQPL DALPDTRKLS
0601: NTTVSHRATR SESQAIAHSH DREVLKKEVI VSQQRKLSEP DSERPPLEKP HVISHPRSPS KGAASAIQSK SELKDLATSD SNSVKRSSLD SSKLTYKPTT
0701: LANLAETAVL LKADPGKGIE RQVAEKPSVH SVSITPQNFQ SHQVTASATT EKSKSQVPAL SRSLNGPVVH GPRPAASVVP MVPTSPLLAC SVSAAGQLGS
0801: DPSPATHSYV PQSYRNAIVG NPVSGNATGF SQPYSPSSMV NCSQPYPQSP SRISGPLFLP QGSERTEPSR IRPSYSYGLS HDTVQNGVQW QSSQRNSRSI
0901: SRDHPSILNE FQNFDVFQPV SRTHDRIPSE LPACTSGRQS QSSLADEFPH LDIINDLLDD EQGIGRMTSM PTTGFQSYSN GSHHLNRRSS FPGDIGMPTD
1001: SGPSTSSNRF EQTRSYHDDI QHKFYEGPLD SASDMIRQPN PRFISGQIDS SAPNQWQMMS SDSSFRGIRT AENDPSNWYN APDYSNMSSG SVNGYRVYRP
1101: PNGL
0101: LIYPQGCDVC NHLSLFLCVA NHDKLLPGWS HFAQFTIAVV NKDPKKSKYS DTLHRFWKNE HDWGWKKFME LSKVLEGFID ADTLIIKAQV QVIRERADRP
0201: FRCLDCQYRR ELVRVYLTNV EQICRRFMEV RRGKLGKLTE DKARWSSFCA FWLGMDQNSR HRMTQEKSHP ILKVVVKHFF IEKEVTSTIV MDSLYSGLKA
0301: IEGQTKGKKG KGKYLDAEEQ LVPIVRLDND MFVLVDDVLL LLERAALEPL PPKDEKGIHN RTKDGASGED FNKYSIERDE RRLTELGRRT IEIFVLTHIF
0401: SKIEVSYQEA VALKRQEELI LEEEAAWLAE TEQKAKKASD KEKKSKRKQG KQKKNNRKKK DKGRDGKTCI IEQEKAERDG CILDGNDYET EEPEAALEKP
0501: DMLENEISFC GLSGLSAAQN GISGRSPPVI DDSSSTCSTD SVPSVAMNAP YRGTSLNHKN QKSPSRLVNH RSKSTSSTTD WASEIHKQPL DALPDTRKLS
0601: NTTVSHRATR SESQAIAHSH DREVLKKEVI VSQQRKLSEP DSERPPLEKP HVISHPRSPS KGAASAIQSK SELKDLATSD SNSVKRSSLD SSKLTYKPTT
0701: LANLAETAVL LKADPGKGIE RQVAEKPSVH SVSITPQNFQ SHQVTASATT EKSKSQVPAL SRSLNGPVVH GPRPAASVVP MVPTSPLLAC SVSAAGQLGS
0801: DPSPATHSYV PQSYRNAIVG NPVSGNATGF SQPYSPSSMV NCSQPYPQSP SRISGPLFLP QGSERTEPSR IRPSYSYGLS HDTVQNGVQW QSSQRNSRSI
0901: SRDHPSILNE FQNFDVFQPV SRTHDRIPSE LPACTSGRQS QSSLADEFPH LDIINDLLDD EQGIGRMTSM PTTGFQSYSN GSHHLNRRSS FPGDIGMPTD
1001: SGPSTSSNRF EQTRSYHDDI QHKFYEGPLD SASDMIRQPN PRFISGQIDS SAPNQWQMMS SDSSFRGIRT AENDPSNWYN APDYSNMSSG SVNGYRVYRP
1101: PNGL
0001: MAEAVDEDSG VGRSLEESSN GQHSQAGEAL SEWRSSGQVE NGTPSTSPSY WDIDDDDDYG LKPSELYGQY TWKIPKFSEI TKREHRSNVF EAGGYKWYIL
0101: IYPQGCDVCN HLSLFLCVAN YDKLLPGWSQ FAQFTISVLS QDLKKSKFSD TLHRFWKKEH DWGWKKFMEL PKLKDGFIDE SGCLTIEAKV QVIRERVDRP
0201: FRCLDCGYRR ELVRVYFQNV EQICRRFVEE KRSKLGRLIE DKARWTSFGV FWLGMDQNSR RRMCREKVDV ILKGVVKHFF VEKEVSSTLV MDSLYSGLKA
0301: LEGQTKNMKA RSRLLDAKQL PAPIVSVDKD MFVLVDDVLL LLERAALEPL PPKDEKGRQN RTKDGNDGEE VNKEADERDE RRLTELGRRT VEIFILSHIF
0401: STKIEVAHQE AIALKRQEEL IREEEEAWLA ETEQRAKRGA AEREKKSKKK QAKQKRNKNK GKDKRKEEKV SFATHAKDLE ENQNQNQNDE EEKDSVTEKA
0501: QSSAEKPDTL GDVSDISDSV DGSADILQPD LEDRDSSSVL WDTDALEIHP PSSEGSSRGR GISISTPNGI TEGKSHSTMD DSSSTCSNDS IRSGVTNGSY
0601: QGNSLNFRNQ KSPNKGKNQQ VKAMTDAHSL ASETDDQPST LGTDPKGQNY SSEASNVGES DWVVVSHIQE PEGSRNRIPV GRERKTVQSI VNSVDMDRPK
0701: EKSTAVLSSP RNVAKNPSPL TQTKPEKKSI STADGIPNRK VLATGPPSSS QVVLPSDIQS QTVGLRADMQ KLSAPKQPPA TTISRPSSAP IIPAMRPSPI
0801: TVSSSVQTTT SLPRSVSSAG RLGPDPSLHN QQTYTPQSYK NAIVGNSLGS SSSSFNHHPS SHGVVPTTLP SSSYSQAPTS SYQSSFPYSQ DGLLWTGRSP
0901: SSVNMGMYNN TYSPAVTSNR SLNHMDVQIA QQQAQSMMTD EFPHLDIIND LLEDEQCSNM VYNGSIFNPQ PQVFNGQYSS YHGELLSGGR TRSFGEEGLH
1001: YMARGPYGTD GMMPRQWQMT NMDLSLPAMR SNGMEDGTSS AANYHHSYFG LDASNPSFTS GINGYTEFRP SNGH
0101: IYPQGCDVCN HLSLFLCVAN YDKLLPGWSQ FAQFTISVLS QDLKKSKFSD TLHRFWKKEH DWGWKKFMEL PKLKDGFIDE SGCLTIEAKV QVIRERVDRP
0201: FRCLDCGYRR ELVRVYFQNV EQICRRFVEE KRSKLGRLIE DKARWTSFGV FWLGMDQNSR RRMCREKVDV ILKGVVKHFF VEKEVSSTLV MDSLYSGLKA
0301: LEGQTKNMKA RSRLLDAKQL PAPIVSVDKD MFVLVDDVLL LLERAALEPL PPKDEKGRQN RTKDGNDGEE VNKEADERDE RRLTELGRRT VEIFILSHIF
0401: STKIEVAHQE AIALKRQEEL IREEEEAWLA ETEQRAKRGA AEREKKSKKK QAKQKRNKNK GKDKRKEEKV SFATHAKDLE ENQNQNQNDE EEKDSVTEKA
0501: QSSAEKPDTL GDVSDISDSV DGSADILQPD LEDRDSSSVL WDTDALEIHP PSSEGSSRGR GISISTPNGI TEGKSHSTMD DSSSTCSNDS IRSGVTNGSY
0601: QGNSLNFRNQ KSPNKGKNQQ VKAMTDAHSL ASETDDQPST LGTDPKGQNY SSEASNVGES DWVVVSHIQE PEGSRNRIPV GRERKTVQSI VNSVDMDRPK
0701: EKSTAVLSSP RNVAKNPSPL TQTKPEKKSI STADGIPNRK VLATGPPSSS QVVLPSDIQS QTVGLRADMQ KLSAPKQPPA TTISRPSSAP IIPAMRPSPI
0801: TVSSSVQTTT SLPRSVSSAG RLGPDPSLHN QQTYTPQSYK NAIVGNSLGS SSSSFNHHPS SHGVVPTTLP SSSYSQAPTS SYQSSFPYSQ DGLLWTGRSP
0901: SSVNMGMYNN TYSPAVTSNR SLNHMDVQIA QQQAQSMMTD EFPHLDIIND LLEDEQCSNM VYNGSIFNPQ PQVFNGQYSS YHGELLSGGR TRSFGEEGLH
1001: YMARGPYGTD GMMPRQWQMT NMDLSLPAMR SNGMEDGTSS AANYHHSYFG LDASNPSFTS GINGYTEFRP SNGH
Arabidopsis Description
TRAF1BTNF receptor-associated factor homolog 1b [Source:UniProtKB/Swiss-Prot;Acc:A8MQL1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.