CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY26906	Canola	cytosol	51.23	94.55
CDX93823	Canola	cytosol	66.01	69.25
CDY01264	Canola	cytosol	34.73	68.78
CDY01258	Canola	cytosol	34.73	68.78
OQU79503	Sorghum	nucleus	51.23	45.92
AT4G16045.1	Thale cress	cytosol	38.67	41.1
CDY68000	Canola	nucleus	7.39	28.3
Os05t0508700-01	Rice	nucleus	51.23	26.98
CDX86642	Canola	nucleus	59.11	22.97
CDY32539	Canola	nucleus	56.4	22.76
CDY18218	Canola	nucleus	59.11	22.68
CDX89828	Canola	nucleus	59.11	22.62
CDY10066	Canola	nucleus	56.4	22.58
GSMUA_Achr2P12590_001	Banana	nucleus	53.45	20.17
CDY22344	Canola	nucleus	45.57	19.96
CDY72484	Canola	cytosol	7.88	19.51
TraesCS5B01G071600.1	Wheat	nucleus	53.2	19.25
HORVU5Hr1G016190.3	Barley	nucleus	53.2	19.23
TraesCS5D01G072000.1	Wheat	nucleus	53.2	19.23
TraesCS5A01G060400.1	Wheat	nucleus	53.2	19.23
CDX94711	Canola	nucleus	45.07	19.0
EES16279	Sorghum	nucleus	52.46	18.98
EES01550	Sorghum	nucleus	50.0	16.78
Os01t0775300-01	Rice	cytosol, mitochondrion, nucleus	51.72	16.12
TraesCS3D01G310000.1	Wheat	nucleus	50.74	16.02
KXG22306	Sorghum	nucleus	49.75	15.68
TraesCS3A01G321300.2	Wheat	nucleus	50.74	15.67
TraesCS3B01G343300.2	Wheat	nucleus	50.74	15.62
TraesCS1B01G339200.1	Wheat	nucleus	51.97	15.22
HORVU3Hr1G075800.5	Barley	cytosol, nucleus, plastid	50.99	15.13
TraesCS1A01G325900.1	Wheat	nucleus	51.72	15.13
TraesCS1D01G327700.1	Wheat	nucleus	51.48	15.06
GSMUA_Achr5P03190_001	Banana	nucleus	51.23	14.73
HORVU1Hr1G078170.6	Barley	cytosol	51.97	14.67
CDX72290	Canola	cytosol, mitochondrion, plastid	6.16	13.74
CDY04994	Canola	cytosol	22.91	8.33
CDY14077	Canola	cytosol	22.91	8.33
CDY55765	Canola	cytosol	22.41	8.16
CDX81009	Canola	cytosol	22.41	8.14
CDX70087	Canola	cytosol	22.17	8.06
CDX98939	Canola	cytosol	21.67	7.89
CDY53923	Canola	cytosol	21.18	7.74
CDY01069	Canola	cytosol	21.18	7.71
CDX73847	Canola	cytosol	20.44	7.57
CDY08485	Canola	cytosol	7.88	3.86
CDY11532	Canola	nucleus, plastid	14.78	3.63
CDY58924	Canola	nucleus, plastid	14.78	3.63
CDY35362	Canola	nucleus, plastid	14.04	3.46
CDX76975	Canola	nucleus, plastid	13.79	3.42
CDY00212	Canola	cytosol	8.62	3.41
CDY08151	Canola	cytosol	8.37	3.27
CDY05943	Canola	cytosol	8.37	3.27
CDX86966	Canola	cytosol	1.97	1.09
Zm00001d034390_P001	Maize	nucleus	0.0	0.0
Os12t0597200-01	Rice	cytosol, nucleus, plastid	0.0	0.0
CDY67533	Canola	cytosol, nucleus	0.0	0.0
CDY47909	Canola	cytosol	0.0	0.0

Protein Annotations

EnsemblPlants:CDX73257	EnsemblPlantsGene:GSBRNA2T00106289001	Gene3D:2.60.210.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002083	InterPro:IPR008974	InterPro:MATH/TRAF_dom	InterPro:TRAF-like	ncoils:Coil	PFAM:PF00917
PFscan:PS50144	ProteinID:CDX73257	ProteinID:CDX73257.1	SEG:seg	SMART:SM00061	SUPFAM:SSF49599
UniParc:UPI0004EAFB4D	MapMan:22.5.1.6	:	:	:	:

Description

BnaC05g28490D

Coordinates

chrLK031798:-:174092..175900

Molecular Weight (calculated)

47510.5 Da

IEP (calculated)

7.165

GRAVY (calculated)

-0.534

Length

406 amino acids

Sequence
(BLAST)

001: MSEVTSKESG ANPSELYGTH TWKIEKFSKI SMPEIRSNVF EVGGHQWSIL VYPKRCEVPT HLSLFLCVAN CDKLLPGWNH FAQFTISMVN KDPKKSKHSD
101: TLHKFGKKEH DWGWKKCMEL PKLHDGFIDE YGSLTIMAQV QVIRDRVDRP FPCLDVHYRR ELVRVYLKEV EPIFLSFMKE KRSKLMEDKT RWESLCAFWL
201: GMDQKSRREM SREKMDVILK LVVKHFYIKK EVTSSLVMDF LFHGLNSLVW SSTTQEKILH TITRQMGKLL KDDLDSSILN ALEEEPKKER ETDVKNLSDP
301: IVSVDKDMFV LVDDAMLLRE KAVLEPLPDE SGPQIRTEVG KDGEREDEKR LTEFARRTLE VFILDHILCN KVEGAYKEAI ALKMQEELIR EEEEENLNKR
401: RVKSTK

Best Arabidopsis Sequence Match ( AT1G04300.1 )
(BLAST)

0001: MAEAVDEDSG VGRSLEESSN GQHSQAGEAL SEWRSSGQVE NGTPSTSPSY WDIDDDDDYG LKPSELYGQY TWKIPKFSEI TKREHRSNVF EAGGYKWYIL
0101: IYPQGCDVCN HLSLFLCVAN YDKLLPGWSQ FAQFTISVLS QDLKKSKFSD TLHRFWKKEH DWGWKKFMEL PKLKDGFIDE SGCLTIEAKV QVIRERVDRP
0201: FRCLDCGYRR ELVRVYFQNV EQICRRFVEE KRSKLGRLIE DKARWTSFGV FWLGMDQNSR RRMCREKVDV ILKGVVKHFF VEKEVSSTLV MDSLYSGLKA
0301: LEGQTKNMKA RSRLLDAKQL PAPIVSVDKD MFVLVDDVLL LLERAALEPL PPKDEKGRQN RTKDGNDGEE VNKEADERDE RRLTELGRRT VEIFILSHIF
0401: STKIEVAHQE AIALKRQEEL IREEEEAWLA ETEQRAKRGA AEREKKSKKK QAKQKRNKNK GKDKRKEEKV SFATHAKDLE ENQNQNQNDE EEKDSVTEKA
0501: QSSAEKPDTL GDVSDISDSV DGSADILQPD LEDRDSSSVL WDTDALEIHP PSSEGSSRGR GISISTPNGI TEGKSHSTMD DSSSTCSNDS IRSGVTNGSY
0601: QGNSLNFRNQ KSPNKGKNQQ VKAMTDAHSL ASETDDQPST LGTDPKGQNY SSEASNVGES DWVVVSHIQE PEGSRNRIPV GRERKTVQSI VNSVDMDRPK
0701: EKSTAVLSSP RNVAKNPSPL TQTKPEKKSI STADGIPNRK VLATGPPSSS QVVLPSDIQS QTVGLRADMQ KLSAPKQPPA TTISRPSSAP IIPAMRPSPI
0801: TVSSSVQTTT SLPRSVSSAG RLGPDPSLHN QQTYTPQSYK NAIVGNSLGS SSSSFNHHPS SHGVVPTTLP SSSYSQAPTS SYQSSFPYSQ DGLLWTGRSP
0901: SSVNMGMYNN TYSPAVTSNR SLNHMDVQIA QQQAQSMMTD EFPHLDIIND LLEDEQCSNM VYNGSIFNPQ PQVFNGQYSS YHGELLSGGR TRSFGEEGLH
1001: YMARGPYGTD GMMPRQWQMT NMDLSLPAMR SNGMEDGTSS AANYHHSYFG LDASNPSFTS GINGYTEFRP SNGH

Arabidopsis Description

TRAF1BTNF receptor-associated factor homolog 1b [Source:UniProtKB/Swiss-Prot;Acc:A8MQL1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.