CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
mitochondrion 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	golgi
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY68000	Canola	nucleus	10.98	16.98
Bra034802.1-P	Field mustard	cytosol	86.59	12.74
CDY01069	Canola	cytosol	84.76	12.47
CDY53923	Canola	cytosol	72.56	10.71
CDX73847	Canola	cytosol	71.34	10.67
AT3G11910.1	Thale cress	cytosol	71.95	10.58
CDY55765	Canola	cytosol	67.68	9.96
VIT_08s0032g00600.t01	Wine grape	cytosol	67.07	9.86
CDY14077	Canola	cytosol	67.07	9.86
CDY04994	Canola	cytosol	67.07	9.86
CDX81009	Canola	cytosol	67.07	9.84
CDX70087	Canola	cytosol	64.63	9.5
CDX98939	Canola	cytosol	64.63	9.5
Solyc10g081610.1.1	Tomato	cytosol, extracellular, nucleus	60.98	8.91
PGSC0003DMT400072539	Potato	cytosol	60.98	8.91
CDX73257	Canola	cytosol	19.51	7.88
CDX93823	Canola	cytosol	12.8	5.43
CDY47909	Canola	cytosol	3.05	4.39
CDY67533	Canola	cytosol, nucleus	4.88	4.17
CDY18218	Canola	nucleus	25.61	3.97
CDX89828	Canola	nucleus	25.61	3.96
CDY32539	Canola	nucleus	23.17	3.78
CDY10066	Canola	nucleus	23.17	3.75
CDX86642	Canola	nucleus	23.78	3.73
CDX94711	Canola	nucleus	20.73	3.53
CDY22344	Canola	nucleus	19.51	3.45
CDX72290	Canola	cytosol, mitochondrion, plastid	3.05	2.75
CDX76975	Canola	nucleus, plastid	25.61	2.57
CDY35362	Canola	nucleus, plastid	25.0	2.49
CDY11532	Canola	nucleus, plastid	24.39	2.42
CDY58924	Canola	nucleus, plastid	24.39	2.42
CDY08485	Canola	cytosol	7.93	1.57
CDY08151	Canola	cytosol	7.32	1.15
CDY05943	Canola	cytosol	7.32	1.15
CDY00212	Canola	cytosol	6.71	1.07
CDX86966	Canola	cytosol	0.61	0.14
CDY26906	Canola	cytosol	0.0	0.0
CDY01264	Canola	cytosol	0.0	0.0
CDY01258	Canola	cytosol	0.0	0.0

Protein Annotations

EnsemblPlants:CDY72484	EnsemblPlantsGene:GSBRNA2T00030055001	Gene3D:2.60.210.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002083	InterPro:IPR008974	InterPro:MATH/TRAF_dom	InterPro:TRAF-like	PANTHER:PTHR24006	PANTHER:PTHR24006:SF565
PFAM:PF00917	PFscan:PS50144	ProteinID:CDY72484	ProteinID:CDY72484.1	SEG:seg	SMART:SM00061
SUPFAM:SSF49599	UniParc:UPI0004EE665F	UniProt:A0A078K0L9	MapMan:35.1	:	:

Description

BnaAnng41290DBnaAnng41290D protein [Source:UniProtKB/TrEMBL;Acc:A0A078K0L9]

Coordinates

chrLK051315:-:69..1658

Molecular Weight (calculated)

18300.9 Da

IEP (calculated)

4.584

GRAVY (calculated)

0.007

Length

164 amino acids

Sequence
(BLAST)

001: MVTPTPLDQQ EDDEMLVPHS DVVEGPQPME VAQPEAAAAA TAVESLPVEE PPTMKYTWTI PGFTRLNTRK HYSDVFVVGG YKWRVLIFPK GNNVDNLSMY
101: LDVADAANLP YGWSRFSQFG LAIVNQINSS YSIRKGIFFD LVLLALLLDA LHEQVLAKFL VSRS

Best Arabidopsis Sequence Match ( AT3G11910.1 )
(BLAST)

0001: MTMMTPPPLD QQEDEEMLVP NPDLVEGPQP MEVAQTDPAA TAVENPPPED PPSLKFTWTI PMFTRLNTRK HYSDVFVVGG YKWRILIFPK GNNVDHLSMY
0101: LDVADAANLP YGWSRYSQFS LAVVNQVNNR YSIRKETQHQ FNARESDWGF TSFMPLSELY EPTRGYLVND TVLIEAEVAV RKVLDYWSYD SKKETGFVGL
0201: KNQGATCYMN SLLQTLYHIP YFRKAVYHMP TTENDAPTAS IPLALQSLFY KLQYNDTSVA TKELTKSFGW DTYDSFMQHD VQELNRVLCE KLEDKMKGTV
0301: VEGTIQKLFE GHHMNYIECI NVDYKSTRKE SFYDLQLDVK GCKDVYASFD KYVEVERLEG DNKYHAEGHD LQDAKKGVLF IDFPPVLQLQ LKRFEYDFMR
0401: DTMVKINDRY EFPLQLDLDR EDGRYLSPDA DKSVRNLYTL HSVLVHSGGV HGGHYYAFIR PTLSDQWYKF DDERVTKEDV KRALEEQYGG EEELPQNNPG
0501: FNNPPFKFTK YSNAYMLVYI RESDKDKIIC NVDEKDIAEH LRVRLKKEQE EKEDKRKYKA QAHLFTTIKV ARDDDITEQI GKNIYFDLVD HEKVRSFRIQ
0601: KQTPFQQFKE EVAKEFGVPV QLQRFWIWAK RQNHTYRPNR PLSPNEELQT VGQIREASNK ANNAELKLFL EIERGPDDLP IPPPEKTSED ILLFFKLYDP
0701: ENAVLRYVGR LMVKSSSKPM DIVGQLNKMA GFAPDEEIEL FEEIKFEPCV MCEQIDKKTS FRLCQIEDGD IICYQKPLSI EESEFRYPDV PSFLEYVQNR
0801: ELVRFRTLEK PKEDEFTMEL SKLHTYDDVV ERVAEKLGLD DPSKLRLTSH NCYSQQPKPQ PIKYRGVDHL SDMLVHYNQT SDILYYEVLD IPLPELQGLK
0901: TLKVAFHSAT KDEVIIHNIR LPKQSTVGDV INELKTKVEL SHQDAELRLL EVFFHKIYKI FPSTERIENI NDQYWTLRAE EIPEEEKNIG PNDRLIHVYH
1001: FTKEAGQNQQ VQNFGEPFFL VIHEGETLEE IKTRIQKKLH VPDEDFAKWK FASFSMGRPD YLLDTDVVYN RFQRRDVYGA WEQYLGLEHI DNAPKRAYAA
1101: NQNRHAYEKP VKIYN

Arabidopsis Description

UBP13UBP13 [Source:UniProtKB/TrEMBL;Acc:A0A178VEE0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.