CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus, cytosol

Predictor Summary:

nucleus 2
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY47909	Canola	cytosol	55.73	93.86
Os07t0163800-01	Rice	cytosol, plasma membrane	73.44	47.96
TraesCS3A01G176700.1	Wheat	cytosol	28.12	27.69
CDY08485	Canola	cytosol	92.71	21.5
CDY01069	Canola	cytosol	92.19	15.87
CDX73847	Canola	cytosol	87.5	15.31
CDY14077	Canola	cytosol	88.54	15.23
CDY04994	Canola	cytosol	88.02	15.14
CDY53923	Canola	cytosol	86.98	15.03
CDY55765	Canola	cytosol	86.98	14.98
CDX70087	Canola	cytosol	86.98	14.96
CDX98939	Canola	cytosol	86.46	14.87
CDX81009	Canola	cytosol	82.81	14.22
CDY72484	Canola	cytosol	4.17	4.88
CDX86966	Canola	cytosol	10.94	2.85
CDY05943	Canola	cytosol	11.46	2.12
CDY08151	Canola	cytosol	11.46	2.12
CDY00212	Canola	cytosol	10.42	1.95
CDX76975	Canola	nucleus, plastid	14.58	1.71
CDY35362	Canola	nucleus, plastid	14.58	1.7
CDX72290	Canola	cytosol, mitochondrion, plastid	1.56	1.65
CDY11532	Canola	nucleus, plastid	13.54	1.57
CDY58924	Canola	nucleus, plastid	13.54	1.57
CDX94711	Canola	nucleus	7.29	1.45
CDY10066	Canola	nucleus	7.29	1.38
CDY22344	Canola	nucleus	6.25	1.29
CDY32539	Canola	nucleus	6.77	1.29
CDX86642	Canola	nucleus	6.77	1.24
CDX89828	Canola	nucleus	6.25	1.13
CDY18218	Canola	nucleus	5.73	1.04
CDY01264	Canola	cytosol	0.0	0.0
CDX93823	Canola	cytosol	0.0	0.0
CDY26906	Canola	cytosol	0.0	0.0
CDY68000	Canola	nucleus	0.0	0.0
CDX73257	Canola	cytosol	0.0	0.0
CDY01258	Canola	cytosol	0.0	0.0

Protein Annotations

EnsemblPlants:CDY67533	EnsemblPlantsGene:GSBRNA2T00064376001	InterPro:USP_C	PANTHER:PTHR24006	PANTHER:PTHR24006:SF614	PFAM:PF14533
ProteinID:CDY67533	ProteinID:CDY67533.1	UniParc:UPI0004EEC22B	UniProt:A0A078JIX9	MapMan:35.1	:

Description

BnaC01g44950DBnaC01g44950D protein (Fragment) [Source:UniProtKB/TrEMBL;Acc:A0A078JIX9]

Coordinates

chrLK036214:-:7732..9729

Molecular Weight (calculated)

22921.0 Da

IEP (calculated)

5.910

GRAVY (calculated)

-0.864

Length

192 amino acids

Sequence
(BLAST)

001: TVGDVINELK TKVELSHPDA ELRLLEVFYH KIYKIFPPTE RIENINDQYW TLRAEEIPEE EKNIGPNDRL IHVYHFTKEA AQNQQVQNFG DPFFLVIHEG
101: ETLEEIKTRI QKKLRVPDED FAKWKFASFS MGRPDYLQDT DVVYDRFQKQ RKDVYGAWEQ YLGLEHVDNT PKRAYAANQN RHAYEKPMKI YN

Best Arabidopsis Sequence Match ( AT3G11910.1 )
(BLAST)

0001: MTMMTPPPLD QQEDEEMLVP NPDLVEGPQP MEVAQTDPAA TAVENPPPED PPSLKFTWTI PMFTRLNTRK HYSDVFVVGG YKWRILIFPK GNNVDHLSMY
0101: LDVADAANLP YGWSRYSQFS LAVVNQVNNR YSIRKETQHQ FNARESDWGF TSFMPLSELY EPTRGYLVND TVLIEAEVAV RKVLDYWSYD SKKETGFVGL
0201: KNQGATCYMN SLLQTLYHIP YFRKAVYHMP TTENDAPTAS IPLALQSLFY KLQYNDTSVA TKELTKSFGW DTYDSFMQHD VQELNRVLCE KLEDKMKGTV
0301: VEGTIQKLFE GHHMNYIECI NVDYKSTRKE SFYDLQLDVK GCKDVYASFD KYVEVERLEG DNKYHAEGHD LQDAKKGVLF IDFPPVLQLQ LKRFEYDFMR
0401: DTMVKINDRY EFPLQLDLDR EDGRYLSPDA DKSVRNLYTL HSVLVHSGGV HGGHYYAFIR PTLSDQWYKF DDERVTKEDV KRALEEQYGG EEELPQNNPG
0501: FNNPPFKFTK YSNAYMLVYI RESDKDKIIC NVDEKDIAEH LRVRLKKEQE EKEDKRKYKA QAHLFTTIKV ARDDDITEQI GKNIYFDLVD HEKVRSFRIQ
0601: KQTPFQQFKE EVAKEFGVPV QLQRFWIWAK RQNHTYRPNR PLSPNEELQT VGQIREASNK ANNAELKLFL EIERGPDDLP IPPPEKTSED ILLFFKLYDP
0701: ENAVLRYVGR LMVKSSSKPM DIVGQLNKMA GFAPDEEIEL FEEIKFEPCV MCEQIDKKTS FRLCQIEDGD IICYQKPLSI EESEFRYPDV PSFLEYVQNR
0801: ELVRFRTLEK PKEDEFTMEL SKLHTYDDVV ERVAEKLGLD DPSKLRLTSH NCYSQQPKPQ PIKYRGVDHL SDMLVHYNQT SDILYYEVLD IPLPELQGLK
0901: TLKVAFHSAT KDEVIIHNIR LPKQSTVGDV INELKTKVEL SHQDAELRLL EVFFHKIYKI FPSTERIENI NDQYWTLRAE EIPEEEKNIG PNDRLIHVYH
1001: FTKEAGQNQQ VQNFGEPFFL VIHEGETLEE IKTRIQKKLH VPDEDFAKWK FASFSMGRPD YLLDTDVVYN RFQRRDVYGA WEQYLGLEHI DNAPKRAYAA
1101: NQNRHAYEKP VKIYN

Arabidopsis Description

UBP13UBP13 [Source:UniProtKB/TrEMBL;Acc:A0A178VEE0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.