Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY04994 | Canola | cytosol | 99.82 | 99.82 |
| Bra028727.1-P | Field mustard | cytosol | 99.64 | 97.72 |
| CDY55765 | Canola | cytosol | 96.95 | 97.04 |
| CDX70087 | Canola | cytosol | 96.06 | 96.06 |
| CDX98939 | Canola | cytosol | 95.61 | 95.61 |
| CDX81009 | Canola | cytosol | 95.34 | 95.17 |
| CDY67533 | Canola | cytosol, nucleus | 15.23 | 88.54 |
| CDY01069 | Canola | cytosol | 87.46 | 87.53 |
| CDY47909 | Canola | cytosol | 8.87 | 86.84 |
| CDY08485 | Canola | cytosol | 64.43 | 86.84 |
| VIT_08s0032g00600.t01 | Wine grape | cytosol | 86.38 | 86.38 |
| CDY53923 | Canola | cytosol | 85.3 | 85.69 |
| CDX73847 | Canola | cytosol | 83.42 | 84.87 |
| Solyc10g081610.1.1 | Tomato | cytosol, extracellular, nucleus | 83.6 | 83.16 |
| PGSC0003DMT400072539 | Potato | cytosol | 83.6 | 83.16 |
| CDY72484 | Canola | cytosol | 9.86 | 67.07 |
| CDX72290 | Canola | cytosol, mitochondrion, plastid | 10.66 | 65.38 |
| CDY68000 | Canola | nucleus | 2.33 | 24.53 |
| CDX73257 | Canola | cytosol | 8.33 | 22.91 |
| CDX93823 | Canola | cytosol | 7.26 | 20.93 |
| CDY00212 | Canola | cytosol | 14.96 | 16.28 |
| CDY32539 | Canola | nucleus | 14.52 | 16.1 |
| CDY10066 | Canola | nucleus | 14.61 | 16.07 |
| CDX86642 | Canola | nucleus | 14.87 | 15.89 |
| CDY05943 | Canola | cytosol | 14.78 | 15.87 |
| CDY08151 | Canola | cytosol | 14.7 | 15.77 |
| CDX89828 | Canola | nucleus | 14.61 | 15.36 |
| CDY18218 | Canola | nucleus | 14.34 | 15.12 |
| CDY26906 | Canola | cytosol | 2.96 | 15.0 |
| CDX94711 | Canola | nucleus | 12.81 | 14.85 |
| CDY22344 | Canola | nucleus | 11.83 | 14.24 |
| CDY01264 | Canola | cytosol | 2.6 | 14.15 |
| CDY01258 | Canola | cytosol | 2.33 | 12.68 |
| CDX86966 | Canola | cytosol | 7.35 | 11.14 |
| CDY11532 | Canola | nucleus, plastid | 16.31 | 11.02 |
| CDY58924 | Canola | nucleus, plastid | 16.31 | 11.0 |
| CDX76975 | Canola | nucleus, plastid | 15.95 | 10.87 |
| CDY35362 | Canola | nucleus, plastid | 15.86 | 10.75 |
Protein Annotations
| MapMan:14.6.2.3 | MapMan:19.2.3.1.1.5 | Gene3D:2.60.210.10 | Gene3D:3.10.20.90 | Gene3D:3.90.70.10 | GO:A0A078FMB4 |
| UniProt:A0A078FMB4 | EnsemblPlants:CDY14077 | ProteinID:CDY14077 | ProteinID:CDY14077.1 | ncoils:Coil | GO:GO:0003674 |
| GO:GO:0003824 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0006464 | GO:GO:0006511 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009056 | GO:GO:0009987 | GO:GO:0016579 | GO:GO:0016787 | GO:GO:0019538 |
| GO:GO:0036459 | EnsemblPlantsGene:GSBRNA2T00078613001 | InterPro:IPR002083 | InterPro:IPR008974 | InterPro:IPR028889 | InterPro:MATH/TRAF_dom |
| PFAM:PF00443 | PFAM:PF00917 | PFAM:PF12436 | PFAM:PF14533 | ScanProsite:PS00972 | ScanProsite:PS00973 |
| PFscan:PS50144 | PFscan:PS50235 | PANTHER:PTHR24006 | PANTHER:PTHR24006:SF565 | InterPro:Papain_like_cys_pep_sf | InterPro:Peptidase_C19_UCH |
| SMART:SM00061 | SUPFAM:SSF49599 | SUPFAM:SSF54001 | InterPro:TRAF-like | UniParc:UPI0004EB2BF9 | InterPro:USP7_ICP0-binding_dom |
| InterPro:USP_C | InterPro:USP_CS | InterPro:USP_dom | SEG:seg | : | : |
Description
BnaC02g01940DBnaC02g01940D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FMB4]
Coordinates
chrLK032040:+:309510..318351
Molecular Weight (calculated)
130921.0 Da
IEP (calculated)
5.492
GRAVY (calculated)
-0.649
Length
1116 amino acids
Sequence
(BLAST)
(BLAST)
0001: MTMVTPPPVD QQEDEEMLVP HSDLVEDPAQ PMEVSETETA VSTVENQPAA EEPPTLKFTW TIPHFSRINT RKQYSDVFVV GGYKWRILIF PKGNNVDHLS
0101: MYLDVADAAS LPYGWSRYAQ FSLAVVNQVH TRYTIRKETQ HQFNARESDW GFTSFMPLSE LYDPSRGYLA NDTVYIEAEV VVRKVLDYWS YDSKKETGFV
0201: GLKNQGATCY MNSLLQTLYH IPYFRKAVYH MPTTENDAPT ASIPLALQSL FYKLQYNDTS VATKELTKSF GWDTYDSFMQ HDVQELNRVL CEKLEDKMKG
0301: TVVEGTIQQL FEGHHMNYIE CINVDYKSTR KESFYDLQLD VKGCKDVYAS FDKYVEVERL EGDNKYHAEG HGLQDAKKGV LFIDFPPVLQ LQLKRFEYDF
0401: MRDSMVKIND RYEFPLELDL DREDGKYLSP DADRSVRNLY TLHSVLVHSG GVHGGHYYAF IRPTLSDQWY KFDDERVTKE DLKRALEEQY GGEEELPQTN
0501: PGFNNPPFKF TKYSNAYMLV YIRESDKDKI ICNVDEKDIA EHLRVRLKKE QEEKEDKRKY KAQAHLFTII KVARDQDLKE QIGKDIYFDL VDHDKVRSFR
0601: IQKQTPFQQF KEEVAKEFGI PVQCQRFWIW AKRQNHTYRP NRPLTPQEEL QPVGQIREAS NKANTAELKL FLEVELLDER PIPPPEKSKD DILLFFKLYD
0701: PEKPELRYVG RLMVKSSSKP MDITGKLNEM AGFAPDEEIE LFEEIKFEPG VMCEHLDKKN SFRLCQIEDG DIICFQKPVV NKEIECRYPA VPLFLEYVQN
0801: RQLVRFRALE KPKEDEFVLE LSKLHTYDDV VERVAEKLGL DDPSKLRLTS HNCYSQQPKP QPIKYRGVDR LSDMLVHYNQ TSDILYYEVL DIPLPELQGL
0901: KTLKVAFHHS TKEEVVIHNI RLPKQSTVGD VINELKTKVE LSHPDAELRI LEVFYHKIYK IFPLTERIEN INDQYWTLRA EEIPEEEKNI GPNDRLILVY
1001: HFAKETGQNQ QVQNFGEPFF LVIHEGETLE EIKNRIQKKL HVSDEDFAKW KFAFMSMGRP EYLQDSDVVY NRFQRRDVYG AFEQYLGLEH TDTTPKRAYA
1101: ANQNRHAYEK PVKIYN
0101: MYLDVADAAS LPYGWSRYAQ FSLAVVNQVH TRYTIRKETQ HQFNARESDW GFTSFMPLSE LYDPSRGYLA NDTVYIEAEV VVRKVLDYWS YDSKKETGFV
0201: GLKNQGATCY MNSLLQTLYH IPYFRKAVYH MPTTENDAPT ASIPLALQSL FYKLQYNDTS VATKELTKSF GWDTYDSFMQ HDVQELNRVL CEKLEDKMKG
0301: TVVEGTIQQL FEGHHMNYIE CINVDYKSTR KESFYDLQLD VKGCKDVYAS FDKYVEVERL EGDNKYHAEG HGLQDAKKGV LFIDFPPVLQ LQLKRFEYDF
0401: MRDSMVKIND RYEFPLELDL DREDGKYLSP DADRSVRNLY TLHSVLVHSG GVHGGHYYAF IRPTLSDQWY KFDDERVTKE DLKRALEEQY GGEEELPQTN
0501: PGFNNPPFKF TKYSNAYMLV YIRESDKDKI ICNVDEKDIA EHLRVRLKKE QEEKEDKRKY KAQAHLFTII KVARDQDLKE QIGKDIYFDL VDHDKVRSFR
0601: IQKQTPFQQF KEEVAKEFGI PVQCQRFWIW AKRQNHTYRP NRPLTPQEEL QPVGQIREAS NKANTAELKL FLEVELLDER PIPPPEKSKD DILLFFKLYD
0701: PEKPELRYVG RLMVKSSSKP MDITGKLNEM AGFAPDEEIE LFEEIKFEPG VMCEHLDKKN SFRLCQIEDG DIICFQKPVV NKEIECRYPA VPLFLEYVQN
0801: RQLVRFRALE KPKEDEFVLE LSKLHTYDDV VERVAEKLGL DDPSKLRLTS HNCYSQQPKP QPIKYRGVDR LSDMLVHYNQ TSDILYYEVL DIPLPELQGL
0901: KTLKVAFHHS TKEEVVIHNI RLPKQSTVGD VINELKTKVE LSHPDAELRI LEVFYHKIYK IFPLTERIEN INDQYWTLRA EEIPEEEKNI GPNDRLILVY
1001: HFAKETGQNQ QVQNFGEPFF LVIHEGETLE EIKNRIQKKL HVSDEDFAKW KFAFMSMGRP EYLQDSDVVY NRFQRRDVYG AFEQYLGLEH TDTTPKRAYA
1101: ANQNRHAYEK PVKIYN
0001: MTMMTPPPVD QPEDEEMLVP NSDLVDGPAQ PMEVTQPETA ASTVENQPAE DPPTLKFTWT IPNFSRQNTR KHYSDVFVVG GYKWRILIFP KGNNVDHLSM
0101: YLDVSDAASL PYGWSRYAQF SLAVVNQIHT RYTVRKETQH QFNARESDWG FTSFMPLSEL YDPSRGYLVN DTVLVEAEVA VRKVLDYWSY DSKKETGFVG
0201: LKNQGATCYM NSLLQTLYHI PYFRKAVYHM PTTENDAPTA SIPLALQSLF YKLQYNDTSV ATKELTKSFG WDTYDSFMQH DVQELNRVLC EKLEDKMKGT
0301: VVEGTIQQLF EGHHMNYIEC INVDFKSTRK ESFYDLQLDV KGCKDVYASF DKYVEVERLE GDNKYHAEGH GLQDAKKGVL FIDFPPVLQL QLKRFEYDFM
0401: RDTMVKINDR YEFPLELDLD REDGKYLSPD ADRSVRNLYT LHSVLVHSGG VHGGHYYAFI RPTLSDQWYK FDDERVTKED LKRALEEQYG GEEELPQTNP
0501: GFNNNPPFKF TKYSNAYMLV YIRESDKDKI ICNVDEKDIA EHLRVRLKKE QEEKEDKRRY KAQAHLYTII KVARDEDLKE QIGKDIYFDL VDHDKVRSFR
0601: IQKQTPFQQF KEEVAKEFGV PVQLQRFWIW AKRQNHTYRP NRPLTPQEEL QPVGQIREAS NKANTAELKL FLEVEHLDLR PIPPPEKSKE DILLFFKLYD
0701: PEKAVLSYAG RLMVKSSSKP MDITGKLNEM VGFAPDEEIE LFEEIKFEPC VMCEHLDKKT SFRLCQIEDG DIICFQKPLV NKEIECLYPA VPSFLEYVQN
0801: RQLVRFRALE KPKEDEFVLE LSKQHTYDDV VEKVAEKLGL DDPSKLRLTS HNCYSQQPKP QPIKYRGVDH LSDMLVHYNQ TSDILYYEVL DIPLPELQGL
0901: KTLKVAFHHA TKEEVVIHNI RLPKQSTVGD VINELKTKVE LSHPDAELRL LEVFYHKIYK IFPSTERIEN INDQYWTLRA EEIPEEEKNI GPNDRLILVY
1001: HFAKETGQNQ QVQNFGEPFF LVIHEGETLE EIKNRIQKKL HVSDEDFAKW KFAFMSMGRP EYLQDTDVVY NRFQRRDVYG AFEQYLGLEH ADTTPKRAYA
1101: ANQNRHAYEK PVKIYN
0101: YLDVSDAASL PYGWSRYAQF SLAVVNQIHT RYTVRKETQH QFNARESDWG FTSFMPLSEL YDPSRGYLVN DTVLVEAEVA VRKVLDYWSY DSKKETGFVG
0201: LKNQGATCYM NSLLQTLYHI PYFRKAVYHM PTTENDAPTA SIPLALQSLF YKLQYNDTSV ATKELTKSFG WDTYDSFMQH DVQELNRVLC EKLEDKMKGT
0301: VVEGTIQQLF EGHHMNYIEC INVDFKSTRK ESFYDLQLDV KGCKDVYASF DKYVEVERLE GDNKYHAEGH GLQDAKKGVL FIDFPPVLQL QLKRFEYDFM
0401: RDTMVKINDR YEFPLELDLD REDGKYLSPD ADRSVRNLYT LHSVLVHSGG VHGGHYYAFI RPTLSDQWYK FDDERVTKED LKRALEEQYG GEEELPQTNP
0501: GFNNNPPFKF TKYSNAYMLV YIRESDKDKI ICNVDEKDIA EHLRVRLKKE QEEKEDKRRY KAQAHLYTII KVARDEDLKE QIGKDIYFDL VDHDKVRSFR
0601: IQKQTPFQQF KEEVAKEFGV PVQLQRFWIW AKRQNHTYRP NRPLTPQEEL QPVGQIREAS NKANTAELKL FLEVEHLDLR PIPPPEKSKE DILLFFKLYD
0701: PEKAVLSYAG RLMVKSSSKP MDITGKLNEM VGFAPDEEIE LFEEIKFEPC VMCEHLDKKT SFRLCQIEDG DIICFQKPLV NKEIECLYPA VPSFLEYVQN
0801: RQLVRFRALE KPKEDEFVLE LSKQHTYDDV VEKVAEKLGL DDPSKLRLTS HNCYSQQPKP QPIKYRGVDH LSDMLVHYNQ TSDILYYEVL DIPLPELQGL
0901: KTLKVAFHHA TKEEVVIHNI RLPKQSTVGD VINELKTKVE LSHPDAELRL LEVFYHKIYK IFPSTERIEN INDQYWTLRA EEIPEEEKNI GPNDRLILVY
1001: HFAKETGQNQ QVQNFGEPFF LVIHEGETLE EIKNRIQKKL HVSDEDFAKW KFAFMSMGRP EYLQDTDVVY NRFQRRDVYG AFEQYLGLEH ADTTPKRAYA
1101: ANQNRHAYEK PVKIYN
Arabidopsis Description
UBP12Ubiquitin carboxyl-terminal hydrolase 12 [Source:UniProtKB/Swiss-Prot;Acc:Q9FPT1]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.