Factsheet for Os07t0163800-01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plasma membrane
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
YLoc:	cytosol

plasma membrane: 27800704

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY67533	Canola	cytosol, nucleus	47.96	73.44
Os12t0489200-01	Rice	cytosol	10.2	69.77
TraesCS3A01G176700.1	Wheat	cytosol	26.53	40.0
VIT_08s0032g00600.t01	Wine grape	cytosol	78.91	20.79
PGSC0003DMT400072539	Potato	cytosol	77.89	20.41
AT3G11910.1	Thale cress	cytosol	76.87	20.27
Solyc10g081610.1.1	Tomato	cytosol, extracellular, nucleus	77.21	20.23
Bra005900.1-P	Field mustard	cytosol	76.53	20.18
AT5G06600.1	Thale cress	cytosol	76.53	20.16
Bra038685.1-P	Field mustard	cytosol	75.17	20.05
Bra009210.1-P	Field mustard	cytosol	74.83	20.0
Bra034802.1-P	Field mustard	cytosol	75.17	19.82
Bra028727.1-P	Field mustard	cytosol	76.53	19.77
Bra001426.1-P	Field mustard	cytosol	70.75	18.7
Solyc06g073820.1.1	Tomato	cytosol	65.31	16.92
Os03t0192900-01	Rice	cytosol, nucleus	3.06	10.11
Os12t0597200-01	Rice	cytosol, nucleus, plastid	10.54	10.03
Os02t0613400-01	Rice	extracellular	9.52	9.49
Os01t0771400-00	Rice	plasma membrane	30.95	8.92
Os01t0775300-01	Rice	cytosol, mitochondrion, nucleus	9.18	2.07
Os03t0192800-01	Rice	nucleus	0.0	0.0
Os05t0508700-01	Rice	nucleus	0.0	0.0
Os11t0573000-01	Rice	cytosol, plasma membrane	0.0	0.0
Os12t0489100-01	Rice	cytosol, extracellular, plasma membrane	0.0	0.0

Protein Annotations

Gene3D:3.10.20.90	MapMan:35.1	UniProt:A0A0N7KMZ4	ProteinID:BAT00186.1	GO:GO:0003674	GO:GO:0003824
GO:GO:0006464	GO:GO:0006508	GO:GO:0006511	GO:GO:0008150	GO:GO:0008152	GO:GO:0008233
GO:GO:0009056	GO:GO:0009987	GO:GO:0016579	GO:GO:0016787	GO:GO:0019538	GO:GO:0036459
EnsemblPlantsGene:Os07g0163800	EnsemblPlants:Os07t0163800-01	PFAM:PF12436	PFAM:PF14533	PANTHER:PTHR24006	PANTHER:PTHR24006:SF614
UniParc:UPI00039395A1	InterPro:USP7_ICP0-binding_dom	InterPro:USP_C	:	:	:

Description

single domain MDC protein 5, single MATH domain containing protein 5Similar to predicted protein. (Os07t0163800-01)

Coordinates

chr7:+:3420545..3424487

Molecular Weight (calculated)

34646.9 Da

IEP (calculated)

6.805

GRAVY (calculated)

-0.763

Length

294 amino acids

Sequence
(BLAST)

001: SKAFTYDEVV EKVAQKLGVD DPTKIRLTSH NCYSQQPKPQ PIKYRGVERL LDMLIHYNQT SDILYYEVLD IPLPELQALK TLKVTYHHGT KDEVSVHSIR
101: LPKNSTVGDV LNDIKSKVEL SHPNAELRLL EVFYHKIYKI FAPNEKIENI NDQYWTLRAE EVPEEEKNLG PFDRLIHVYH FTKDTQNQTQ VQNFGEPFFM
201: VIREDETLSS IKERIQKKLK VPDEDFSKWK FAYISLGRPD YFEDSDTVAS RFQRNMYGAW EQYLGLEHPD TAPRKTHNAN QNRHSFERPV KIYN

Best Arabidopsis Sequence Match ( AT5G06600.2 )
(BLAST)

0001: MTMMTPPPVD PEDEEMLVPN SDLVDGPAQP MEVTQPETAA STVENQPAED PPTLKFTWTI PNFSRQNTRK HYSDVFVVGG YKWRILIFPK GNNVDHLSMY
0101: LDVSDAASLP YGWSRYAQFS LAVVNQIHTR YTVRKETQHQ FNARESDWGF TSFMPLSELY DPSRGYLVND TVLVEAEVAV RKVLDYWSYD SKKETGFVGL
0201: KNQGATCYMN SLLQTLYHIP YFRKAVYHMP TTENDAPTAS IPLALQSLFY KLQYNDTSVA TKELTKSFGW DTYDSFMQHD VQELNRVLCE KLEDKMKGTV
0301: VEGTIQQLFE GHHMNYIECI NVDFKSTRKE SFYDLQLDVK GCKDVYASFD KYVEVERLEG DNKYHAEGHG LQDAKKGVLF IDFPPVLQLQ LKRFEYDFMR
0401: DTMVKINDRY EFPLELDLDR EDGKYLSPDA DRSVRNLYTL HSVLVHSGGV HGGHYYAFIR PTLSDQWYKF DDERVTKEDL KRALEEQYGG EEELPQTNPG
0501: FNNNPPFKFT KYSNAYMLVY IRESDKDKII CNVDEKDIAE HLRVRLKKEQ EEKEDKRRYK AQAHLYTIIK VARDEDLKEQ IGKDIYFDLV DHDKVRSFRI
0601: QKQTPFQQFK EEVAKEFGVP VQLQRFWIWA KRQNHTYRPN RPLTPQEELQ PVGQIREASN KANTAELKLF LEVEHLDLRP IPPPEKSKED ILLFFKLYDP
0701: EKAVLSYAGR LMVKSSSKPM DITGKLNEMV GFAPDEEIEL FEEIKFEPCV MCEHLDKKTS FRLCQIEDGD IICFQKPLVN KEIECLYPAV PSFLEYVQNR
0801: QLVRFRALEK PKEDEFVLEL SKQHTYDDVV EKVAEKLGLD DPSKLRLTSH NCYSQQPKPQ PIKYRGVDHL SDMLVHYNQT SDILYYEVLD IPLPELQGLK
0901: TLKVAFHHAT KEEVVIHNIR LPKQSTVGDV INELKTKVEL SHPDAELRLL EVFYHKIYKI FPSTERIENI NDQYWTLRAE EIPEEEKNIG PNDRLILVYH
1001: FAKETGQNQQ VQNFGEPFFL VIHEGETLEE IKNRIQKKLH VSDEDFAKWK FAFMSMGRPE YLQDTDVVYN RFQRRDVYGA FEQYLGLEHA DTTPKRAYAA
1101: NQNRHAYEKP VKIYN

Arabidopsis Description

UBP12Ubiquitin carboxyl-terminal hydrolase 12 [Source:UniProtKB/Swiss-Prot;Acc:Q9FPT1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.