Factsheet for Bra009210.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX70087	Canola	cytosol	99.36	97.94
CDX98939	Canola	cytosol	98.64	97.22
Bra005900.1-P	Field mustard	cytosol	95.82	94.53
AT5G06600.1	Thale cress	cytosol	95.45	94.09
Bra028727.1-P	Field mustard	cytosol	96.0	92.79
Bra038685.1-P	Field mustard	cytosol	87.82	87.66
Bra034802.1-P	Field mustard	cytosol	87.18	86.01
VIT_08s0032g00600.t01	Wine grape	cytosol	86.73	85.48
Bra001426.1-P	Field mustard	cytosol	84.64	83.72
PGSC0003DMT400072539	Potato	cytosol	83.18	81.55
Solyc10g081610.1.1	Tomato	cytosol, extracellular, nucleus	83.18	81.55
Os07t0163800-01	Rice	cytosol, plasma membrane	20.0	74.83
CDX72290	Canola	cytosol, mitochondrion, plastid	10.91	65.93
TraesCS3A01G176700.1	Wheat	cytosol	5.82	32.82
Bra041162.1-P	Field mustard	cytosol, nucleus, plastid	3.91	21.61
Bra023279.1-P	Field mustard	cytosol	6.27	19.77
Bra019603.1-P	Field mustard	cytosol	15.18	16.28
Bra017972.1-P	Field mustard	cytosol	14.91	15.77
Bra032518.1-P	Field mustard	nucleus	13.64	15.09
Bra015302.1-P	Field mustard	nucleus	14.45	15.0
Bra010174.1-P	Field mustard	cytosol	3.0	15.0
Bra033684.1-P	Field mustard	nucleus	11.64	13.81
Bra007802.1-P	Field mustard	nucleus, plastid	16.55	10.94
Bra034251.1-P	Field mustard	nucleus	16.27	10.87

Protein Annotations

MapMan:14.6.2.3	MapMan:19.2.3.1.1.5	Gene3D:2.60.210.10	Gene3D:3.10.20.90	Gene3D:3.90.70.10	EnsemblPlantsGene:Bra009210
EnsemblPlants:Bra009210.1	EnsemblPlants:Bra009210.1-P	ncoils:Coil	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0005515	GO:GO:0006464	GO:GO:0006511	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056
GO:GO:0009987	GO:GO:0016579	GO:GO:0016787	GO:GO:0019538	GO:GO:0036459	InterPro:IPR002083
InterPro:IPR008974	InterPro:IPR028889	UniProt:M4CYB3	InterPro:MATH/TRAF_dom	PFAM:PF00443	PFAM:PF00917
PFAM:PF12436	PFAM:PF14533	ScanProsite:PS00972	ScanProsite:PS00973	PFscan:PS50144	PFscan:PS50235
PANTHER:PTHR24006	PANTHER:PTHR24006:SF565	InterPro:Papain_like_cys_pep_sf	InterPro:Peptidase_C19_UCH	SMART:SM00061	SUPFAM:SSF49599
SUPFAM:SSF54001	InterPro:TRAF-like	UniParc:UPI00025451C0	InterPro:USP7_ICP0-binding_dom	InterPro:USP_C	InterPro:USP_CS
InterPro:USP_dom	SEG:seg	:	:	:	:

Description

AT5G06600 (E=0.0) UBP12 | UBP12 (UBIQUITIN-SPECIFIC PROTEASE 12); ubiquitin thiolesterase/ ubiquitin-specific protease

Coordinates

chrA10:-:15649587..15657409

Molecular Weight (calculated)

128916.0 Da

IEP (calculated)

5.914

GRAVY (calculated)

-0.650

Length

1100 amino acids

Sequence
(BLAST)

0001: MLVPHSDLVD GTTQPMEVSE TEAAVSTVEN QQPAEDPPTL KFTWTVPNFS RQNTRKHYSD VFVVGGYKWR ILIFPKGNNV DHLSMYLDVA DAATLPYGWS
0101: RYAQFSLAVV NQIHTRYTIR KETQHQFNAR ESDWGFTSFM PLSELYDPSR GYLVNDTVFV EAEVAVRKVL DYWSYDSKKE TGFVGLKNQG ATCYMNSLLQ
0201: TLYHIPYFRK AVYHMPTTEN DAPTASIPLA LQSLFYKLQY NDTSVATKEL TKSFGWDTYD SFMQHDVQEL NRVLSEKLED KMKGTVVEGT IQQLFEGHHM
0301: NYIECINVDY KSTRKESFYD LQLDVKGCKD VYASFDKYVE VERLEGDNKY HAEGHGLQDA KKGVLFIDFP PVLQLQLKRF EYDFMRDTMV KINDRYEFPL
0401: ELDLDRENGK YLSPDADRSV RNLYTLHSVL VHSGGVHGGH YYAFIRPTLS DQWYKFDDER VTKEDLKRAL EEQYGGEEEL PQTNPGFNNP PFKLTKYSNA
0501: YMLVYIRESD KDKIICNVDE KDIAEHLRIR LKKEQEEKEE KRKYKAQAHL FTIIKVARDQ DLKEQIGKDI YFDLVDHDKV RSFRIQKQTP FQQFKEEVAK
0601: EFGVPVQLQR FWIWAKRQNH TYRPNRPLTP QEELQPVGQI REASNKANTA ELKLFLEVEL LVERPIPPPD KSKEDILLFF KLYDPEKQEL RYVGRLMVKS
0701: SSKPMDITGK LNEMAGFAPD EEIELFEEIK FEPCVMCEHL DKKTSFKLCQ IEDGDIICFQ KPLGNKETEC RYPAVPSFLE YVQNRQLVRF RALEKPKEDE
0801: FVLELSKLHT YDDVVERVAE KLGLDDPSKL RLTSHNCYSQ QPKPQPIKYR GVDHLSDMLV HYNQTSDILY YEILDIPLPE LQGLKTLKVA FHHATKEEVV
0901: IHNIRLPKQS TVGDVINELK TKVELSHPDA ELRILEALYH KIYKIFPLTE RIENINDQYW TLRAEEIPEE EKNIGPNDRL ILVYHFAKET GQNQQVQNFG
1001: EPFFLVIHEG ETLEEIKNRI QKKLHVSDED FAKWKFAFMS MGRPEYLQDS DVVYNRFQRR DVYGAFEQYL GLEHTDTSPK RAYSANQSRH TYEKPVKIYN

Best Arabidopsis Sequence Match ( AT5G06600.2 )
(BLAST)

0001: MTMMTPPPVD PEDEEMLVPN SDLVDGPAQP MEVTQPETAA STVENQPAED PPTLKFTWTI PNFSRQNTRK HYSDVFVVGG YKWRILIFPK GNNVDHLSMY
0101: LDVSDAASLP YGWSRYAQFS LAVVNQIHTR YTVRKETQHQ FNARESDWGF TSFMPLSELY DPSRGYLVND TVLVEAEVAV RKVLDYWSYD SKKETGFVGL
0201: KNQGATCYMN SLLQTLYHIP YFRKAVYHMP TTENDAPTAS IPLALQSLFY KLQYNDTSVA TKELTKSFGW DTYDSFMQHD VQELNRVLCE KLEDKMKGTV
0301: VEGTIQQLFE GHHMNYIECI NVDFKSTRKE SFYDLQLDVK GCKDVYASFD KYVEVERLEG DNKYHAEGHG LQDAKKGVLF IDFPPVLQLQ LKRFEYDFMR
0401: DTMVKINDRY EFPLELDLDR EDGKYLSPDA DRSVRNLYTL HSVLVHSGGV HGGHYYAFIR PTLSDQWYKF DDERVTKEDL KRALEEQYGG EEELPQTNPG
0501: FNNNPPFKFT KYSNAYMLVY IRESDKDKII CNVDEKDIAE HLRVRLKKEQ EEKEDKRRYK AQAHLYTIIK VARDEDLKEQ IGKDIYFDLV DHDKVRSFRI
0601: QKQTPFQQFK EEVAKEFGVP VQLQRFWIWA KRQNHTYRPN RPLTPQEELQ PVGQIREASN KANTAELKLF LEVEHLDLRP IPPPEKSKED ILLFFKLYDP
0701: EKAVLSYAGR LMVKSSSKPM DITGKLNEMV GFAPDEEIEL FEEIKFEPCV MCEHLDKKTS FRLCQIEDGD IICFQKPLVN KEIECLYPAV PSFLEYVQNR
0801: QLVRFRALEK PKEDEFVLEL SKQHTYDDVV EKVAEKLGLD DPSKLRLTSH NCYSQQPKPQ PIKYRGVDHL SDMLVHYNQT SDILYYEVLD IPLPELQGLK
0901: TLKVAFHHAT KEEVVIHNIR LPKQSTVGDV INELKTKVEL SHPDAELRLL EVFYHKIYKI FPSTERIENI NDQYWTLRAE EIPEEEKNIG PNDRLILVYH
1001: FAKETGQNQQ VQNFGEPFFL VIHEGETLEE IKNRIQKKLH VSDEDFAKWK FAFMSMGRPE YLQDTDVVYN RFQRRDVYGA FEQYLGLEHA DTTPKRAYAA
1101: NQNRHAYEKP VKIYN

Arabidopsis Description

UBP12Ubiquitin carboxyl-terminal hydrolase 12 [Source:UniProtKB/Swiss-Prot;Acc:Q9FPT1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.