Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EES16279 | Sorghum | nucleus | 91.0 | 90.11 |
| Zm00001d030960_P003 | Maize | nucleus | 88.39 | 87.37 |
| Zm00001d030958_P001 | Maize | nucleus | 31.86 | 77.63 |
| TraesCS5D01G072000.1 | Wheat | nucleus | 72.19 | 71.42 |
| TraesCS5B01G071600.1 | Wheat | nucleus | 72.01 | 71.3 |
| HORVU5Hr1G016190.3 | Barley | nucleus | 71.83 | 71.06 |
| TraesCS5A01G060400.1 | Wheat | nucleus | 71.83 | 71.06 |
| Os12t0597200-01 | Rice | cytosol, nucleus, plastid | 17.73 | 63.75 |
| GSMUA_Achr2P12590_001 | Banana | nucleus | 47.34 | 48.88 |
| GSMUA_Achr5P03190_001 | Banana | nucleus | 48.24 | 37.96 |
| Zm00001d038655_P003 | Maize | nucleus | 40.23 | 34.38 |
| Zm00001d043294_P006 | Maize | nucleus | 37.71 | 32.73 |
| Zm00001d010716_P002 | Maize | nucleus | 36.54 | 30.85 |
| Zm00001d034390_P001 | Maize | nucleus | 5.4 | 23.26 |
| Zm00001d023640_P004 | Maize | cytosol | 14.13 | 13.87 |
| Zm00001d041035_P002 | Maize | cytosol | 13.77 | 13.43 |
| Zm00001d043312_P001 | Maize | nucleus | 13.23 | 13.16 |
| Zm00001d007904_P003 | Maize | cytosol | 13.68 | 13.09 |
| Zm00001d018859_P010 | Maize | cytosol | 13.14 | 13.0 |
| Zm00001d052943_P023 | Maize | plastid | 12.78 | 10.6 |
| Zm00001d020157_P011 | Maize | cytosol, mitochondrion, nucleus | 7.47 | 7.62 |
| Zm00001d028177_P004 | Maize | cytosol | 6.93 | 7.18 |
| Zm00001d051075_P002 | Maize | nucleus | 10.62 | 6.97 |
Protein Annotations
| EnsemblPlants:Zm00001d041395_P002 | EnsemblPlants:Zm00001d041395_T002 | EnsemblPlantsGene:Zm00001d041395 | EntrezGene:100502244 | Gene3D:2.60.210.10 | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005515 | InterPro:IPR002083 | InterPro:IPR008974 | InterPro:MATH/TRAF_dom | InterPro:TRAF-like |
| ncoils:Coil | PANTHER:PTHR45001 | PFAM:PF00917 | PFscan:PS50144 | ProteinID:ONM32917.1 | SEG:seg |
| SMART:SM00061 | SUPFAM:SSF49599 | UniParc:UPI000221A5F7 | UniProt:A0A1D6MVT3 | MapMan:22.5.1.6 | : |
Description
TRAF-like superfamily protein
Coordinates
chr3:+:116053637..116080626
Molecular Weight (calculated)
124350.0 Da
IEP (calculated)
6.293
GRAVY (calculated)
-0.778
Length
1111 amino acids
Sequence
(BLAST)
(BLAST)
0001: MASDRIMVDT LTEDNGGDAR SSSSEEMPSD QQSHPGDSLA EWRSSEQVEN GTPSTSPAYS DNDDDDCGPR PSDLYGKFTW RIDNFSQINK RELRSNSFDV
0101: GGFKWYILIY PQGCDVCNHL SLFLCVANHD KLLPGWSHFA QFTIAVINRD PKKSKYSDTL HRFWKKEHDW GWKKFMELSK LHDGFIVEDV LTIKAQVQVI
0201: REKTDRPFRC LDGHYRRELI RVYLSNVEQV CRRFIDERRS KLSRLIEDKL GWSSFSGFWL AMDPSVRRHM TREKTETILK VIVKQFFIEK EVTSTLVIDS
0301: LYSGLKALEY QSKNKKAIPK LTETDARSTP MVLIDQDMFV LADDVIFLLE RAALDTLPHQ HLPTKDDKSS QNRTKDGNSG QEFSKDSIER DDRRLIELGW
0401: KTLELFSLAH IFSRIQVAHQ EAVALKRQEE LIREEEEAGL AEIELKAKRS AAEKEKRAKK KQAKQKKNSR KGNKGKSGKS NINKEIIMDH SHSDDRILDD
0501: FCGQIEEMPL NADNPEEVSD ISDSRDDNSD MLHVDIEDRE SSPVNWEIDA SETQTTIPGS SEVQNDHAGK RTSTVDDSSS SCSSDSVPSV TVNGSYKGGA
0601: WTSVRSSSNR GNNRRNKDTE ARAGFAQGGS CSSHNGFIGS GSNASGHSKE RHEPEDDKVV LQRKQHAQWN IDIISSSKSR MAESSFSSVS SIKKQPQPNF
0701: LLESTNSLNH RGSEASGTVT STTTAGASST PATQLVLNKG PVSSAATQNE KPLPLQVLVP SKSEVQKQAS LTGSATTEAV SVSRPLTAPQ VPAAKQSAPV
0801: TSTAQNAPFL SRSMSAVGRL GNEPSANAPS FVPRSRTYRN AMMEKSSGGG SCFTHQQGSS EQAVAPWQSM FTSQPFIRPS ETLSWKEETL LRSGFTFGTV
0901: KPESLNPYQG REENSQQASS NSSDCAPSSS NIRSEIEKLN LSGRPRSKQL LSEISTRFTP YQPQGLVADE FPHLDIINDL LDEEQSDRRR VLQPDFVQQS
1001: YMPHGASTPD YGEPYLFDQS EQYFDEEPPR FYSPLSSAPR RLRDLSYSHF DLPSHSSSSQ FDDLMMSQWP YSRTDISMPS FGSDTSGYPY QVWDLANGSS
1101: RYPSYRPANG H
0101: GGFKWYILIY PQGCDVCNHL SLFLCVANHD KLLPGWSHFA QFTIAVINRD PKKSKYSDTL HRFWKKEHDW GWKKFMELSK LHDGFIVEDV LTIKAQVQVI
0201: REKTDRPFRC LDGHYRRELI RVYLSNVEQV CRRFIDERRS KLSRLIEDKL GWSSFSGFWL AMDPSVRRHM TREKTETILK VIVKQFFIEK EVTSTLVIDS
0301: LYSGLKALEY QSKNKKAIPK LTETDARSTP MVLIDQDMFV LADDVIFLLE RAALDTLPHQ HLPTKDDKSS QNRTKDGNSG QEFSKDSIER DDRRLIELGW
0401: KTLELFSLAH IFSRIQVAHQ EAVALKRQEE LIREEEEAGL AEIELKAKRS AAEKEKRAKK KQAKQKKNSR KGNKGKSGKS NINKEIIMDH SHSDDRILDD
0501: FCGQIEEMPL NADNPEEVSD ISDSRDDNSD MLHVDIEDRE SSPVNWEIDA SETQTTIPGS SEVQNDHAGK RTSTVDDSSS SCSSDSVPSV TVNGSYKGGA
0601: WTSVRSSSNR GNNRRNKDTE ARAGFAQGGS CSSHNGFIGS GSNASGHSKE RHEPEDDKVV LQRKQHAQWN IDIISSSKSR MAESSFSSVS SIKKQPQPNF
0701: LLESTNSLNH RGSEASGTVT STTTAGASST PATQLVLNKG PVSSAATQNE KPLPLQVLVP SKSEVQKQAS LTGSATTEAV SVSRPLTAPQ VPAAKQSAPV
0801: TSTAQNAPFL SRSMSAVGRL GNEPSANAPS FVPRSRTYRN AMMEKSSGGG SCFTHQQGSS EQAVAPWQSM FTSQPFIRPS ETLSWKEETL LRSGFTFGTV
0901: KPESLNPYQG REENSQQASS NSSDCAPSSS NIRSEIEKLN LSGRPRSKQL LSEISTRFTP YQPQGLVADE FPHLDIINDL LDEEQSDRRR VLQPDFVQQS
1001: YMPHGASTPD YGEPYLFDQS EQYFDEEPPR FYSPLSSAPR RLRDLSYSHF DLPSHSSSSQ FDDLMMSQWP YSRTDISMPS FGSDTSGYPY QVWDLANGSS
1101: RYPSYRPANG H
0001: MAEAVDEDSG VGRSLEESSN GQHSQAGEAL SEWRSSGQVE NGTPSTSPSY WDIDDDDDYG LKPSELYGQY TWKIPKFSEI TKREHRSNVF EAGGYKWYIL
0101: IYPQGCDVCN HLSLFLCVAN YDKLLPGWSQ FAQFTISVLS QDLKKSKFSD TLHRFWKKEH DWGWKKFMEL PKLKDGFIDE SGCLTIEAKV QVIRERVDRP
0201: FRCLDCGYRR ELVRVYFQNV EQICRRFVEE KRSKLGRLIE DKARWTSFGV FWLGMDQNSR RRMCREKVDV ILKGVVKHFF VEKEVSSTLV MDSLYSGLKA
0301: LEGQTKNMKA RSRLLDAKQL PAPIVSVDKD MFVLVDDVLL LLERAALEPL PPKDEKGRQN RTKDGNDGEE VNKEADERDE RRLTELGRRT VEIFILSHIF
0401: STKIEVAHQE AIALKRQEEL IREEEEAWLA ETEQRAKRGA AEREKKSKKK QAKQKRNKNK GKDKRKEEKV SFATHAKDLE ENQNQNQNDE EEKDSVTEKA
0501: QSSAEKPDTL GDVSDISDSV DGSADILQPD LEDRDSSSVL WDTDALEIHP PSSEGSSRGR GISISTPNGI TEGKSHSTMD DSSSTCSNDS IRSGVTNGSY
0601: QGNSLNFRNQ KSPNKGKNQQ VKAMTDAHSL ASETDDQPST LGTDPKGQNY SSEASNVGES DWVVVSHIQE PEGSRNRIPV GRERKTVQSI VNSVDMDRPK
0701: EKSTAVLSSP RNVAKNPSPL TQTKPEKKSI STADGIPNRK VLATGPPSSS QVVLPSDIQS QTVGLRADMQ KLSAPKQPPA TTISRPSSAP IIPAMRPSPI
0801: TVSSSVQTTT SLPRSVSSAG RLGPDPSLHN QQTYTPQSYK NAIVGNSLGS SSSSFNHHPS SHGVVPTTLP SSSYSQAPTS SYQSSFPYSQ DGLLWTGRSP
0901: SSVNMGMYNN TYSPAVTSNR SLNHMDVQIA QQQAQSMMTD EFPHLDIIND LLEDEQCSNM VYNGSIFNPQ PQVFNGQYSS YHGELLSGGR TRSFGEEGLH
1001: YMARGPYGTD GMMPRQWQMT NMDLSLPAMR SNGMEDGTSS AANYHHSYFG LDASNPSFTS GINGYTEFRP SNGH
0101: IYPQGCDVCN HLSLFLCVAN YDKLLPGWSQ FAQFTISVLS QDLKKSKFSD TLHRFWKKEH DWGWKKFMEL PKLKDGFIDE SGCLTIEAKV QVIRERVDRP
0201: FRCLDCGYRR ELVRVYFQNV EQICRRFVEE KRSKLGRLIE DKARWTSFGV FWLGMDQNSR RRMCREKVDV ILKGVVKHFF VEKEVSSTLV MDSLYSGLKA
0301: LEGQTKNMKA RSRLLDAKQL PAPIVSVDKD MFVLVDDVLL LLERAALEPL PPKDEKGRQN RTKDGNDGEE VNKEADERDE RRLTELGRRT VEIFILSHIF
0401: STKIEVAHQE AIALKRQEEL IREEEEAWLA ETEQRAKRGA AEREKKSKKK QAKQKRNKNK GKDKRKEEKV SFATHAKDLE ENQNQNQNDE EEKDSVTEKA
0501: QSSAEKPDTL GDVSDISDSV DGSADILQPD LEDRDSSSVL WDTDALEIHP PSSEGSSRGR GISISTPNGI TEGKSHSTMD DSSSTCSNDS IRSGVTNGSY
0601: QGNSLNFRNQ KSPNKGKNQQ VKAMTDAHSL ASETDDQPST LGTDPKGQNY SSEASNVGES DWVVVSHIQE PEGSRNRIPV GRERKTVQSI VNSVDMDRPK
0701: EKSTAVLSSP RNVAKNPSPL TQTKPEKKSI STADGIPNRK VLATGPPSSS QVVLPSDIQS QTVGLRADMQ KLSAPKQPPA TTISRPSSAP IIPAMRPSPI
0801: TVSSSVQTTT SLPRSVSSAG RLGPDPSLHN QQTYTPQSYK NAIVGNSLGS SSSSFNHHPS SHGVVPTTLP SSSYSQAPTS SYQSSFPYSQ DGLLWTGRSP
0901: SSVNMGMYNN TYSPAVTSNR SLNHMDVQIA QQQAQSMMTD EFPHLDIIND LLEDEQCSNM VYNGSIFNPQ PQVFNGQYSS YHGELLSGGR TRSFGEEGLH
1001: YMARGPYGTD GMMPRQWQMT NMDLSLPAMR SNGMEDGTSS AANYHHSYFG LDASNPSFTS GINGYTEFRP SNGH
Arabidopsis Description
TRAF1BTNF receptor-associated factor homolog 1b [Source:UniProtKB/Swiss-Prot;Acc:A8MQL1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.