CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os12t0489100-01	Rice	cytosol, extracellular, plasma membrane	45.44	92.2
TraesCS4D01G165800.1	Wheat	unclear	89.71	89.63
TraesCS4A01G163000.1	Wheat	cytosol	89.36	89.44
EES15989	Sorghum	cytosol	89.09	88.77
TraesCS5A01G105900.1	Wheat	cytosol	88.46	88.38
HORVU5Hr1G031980.4	Barley	cytosol	88.46	88.3
TraesCS5B01G111000.7	Wheat	cytosol	88.82	88.11
TraesCS5D01G123300.4	Wheat	cytosol	88.55	87.84
GSMUA_Achr5P02720_001	Banana	cytosol	84.79	85.02
GSMUA_Achr4P28400_001	Banana	cytosol	84.53	84.75
VIT_13s0073g00610.t01	Wine grape	cytosol	83.81	84.04
VIT_06s0009g00960.t01	Wine grape	cytosol	83.63	83.78
Os12t0489200-01	Rice	cytosol	3.22	83.72
GSMUA_Achr10P...	Banana	cytosol	83.27	83.5
HORVU4Hr1G034950.2	Barley	cytosol	82.92	82.92
GSMUA_Achr4P22710_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	83.45	81.06
Solyc11g006320.1.1	Tomato	cytosol	79.96	80.04
KXG34448	Sorghum	nucleus	78.98	78.98
Solyc05g055090.2.1	Tomato	cytosol	78.71	78.64
Zm00001d052943_P023	Maize	plastid	83.09	69.38
KXG33467	Sorghum	nucleus	66.91	66.91
OQU79503	Sorghum	nucleus	9.21	22.74
OQU79121	Sorghum	nucleus	14.49	16.01
EES16279	Sorghum	nucleus	14.4	14.35
EES01550	Sorghum	nucleus	14.31	13.22
KXG22306	Sorghum	nucleus	14.67	12.73
EES07147	Sorghum	nucleus, plastid	15.83	10.63

Protein Annotations

MapMan:14.6.2.3	MapMan:19.2.3.1.1.5	Gene3D:2.60.210.10	Gene3D:3.10.20.90	Gene3D:3.90.70.10	EntrezGene:8071953
UniProt:C5Y4X8	ncoils:Coil	EnsemblPlants:EES09985	ProteinID:EES09985	ProteinID:EES09985.1	GO:GO:0003674
GO:GO:0003824	GO:GO:0005488	GO:GO:0005515	GO:GO:0006464	GO:GO:0006511	GO:GO:0008150
GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0016579	GO:GO:0016787	GO:GO:0019538
GO:GO:0036459	InterPro:IPR002083	InterPro:IPR008974	InterPro:IPR028889	InterPro:MATH/TRAF_dom	PFAM:PF00443
PFAM:PF00917	PFAM:PF12436	PFAM:PF14533	ScanProsite:PS00972	ScanProsite:PS00973	PFscan:PS50144
PFscan:PS50235	PANTHER:PTHR24006	PANTHER:PTHR24006:SF577	InterPro:Papain_like_cys_pep_sf	InterPro:Peptidase_C19_UCH	SMART:SM00061
EnsemblPlantsGene:SORBI_3005G162500	SUPFAM:SSF49599	SUPFAM:SSF54001	unigene:Sbi.11471	InterPro:TRAF-like	UniParc:UPI0001A86C16
InterPro:USP7_ICP0-binding_dom	InterPro:USP_C	InterPro:USP_CS	InterPro:USP_dom	RefSeq:XP_002450997.1	SEG:seg

Description

hypothetical protein

Coordinates

chr5:-:63781782..63796744

Molecular Weight (calculated)

131190.0 Da

IEP (calculated)

5.577

GRAVY (calculated)

-0.639

Length

1118 amino acids

Sequence
(BLAST)

0001: MTMVTPPTVE HEDEEMLVPA QEVAAADTDA AQPMEVVAQT EVVSTAESQP VEDPQTSRFT WTIENFTRFN GKKHYSEVFV VGGFKWRVLI FPKGNNVDHF
0101: SMYLDVADSA NLPYGWSRYA QFSLAVVNQI QPKYTIRKDT QHQFNARESD WGFTSFMPLS DLYDASRGYL VNDTVVVEAE VAVRRMVDYW TYDSKKETGY
0201: VGLKNQGATC YMNSLLQTLY HIPYFRKAVY HMPTTENDMP SGSIPLALQS LFYKLQYSDS SVATKELTKS FGWDTYDSFM QHDVQELNRV LSEKLEDKMK
0301: GTVVEGTIEQ LFEGHHINYI ECINVEYKSN RKESFYDLQL DVKGCRDIYS SFDKYVEVER LEGDNKYHAE NHGLQDAKKG VLFLDFPPVL QLQLKRFEYD
0401: YMRDTMVKIN DRYEFPLQLD LDRDDGKYLA PDADRSTRNL YTLHSVLVHS GGVHGGHYYA FIRPTLSEQW YKFDDERVTK EDAKKALEEQ YGGEEELPQI
0501: NPGFNNAPFK FTKYSNAYML VYIRESDKEK IMCTVDEKDI AEHLRVRLKK EQEEKEHKKK EKAEAHLYTI IKVARDEDLK EQIGKDMYFD LVDHEKVRNF
0601: RIQKQMPFSS FKEEVAKEYG IPVQFQRFWL WAKRQNHTYR PNRPLTLHEE TQSVGQLREV SNKAHNAELK LFLEVEVGLD LRPLPPPEKG KEDILLFFKL
0701: YNPEKEELRF MGRLFVKALG KPSEILAKLN EMAGFSPDQE IELYEEIKFE PNVMCEIIDK KLTFRSSQLE DGDIVCFQKS PGAEYDAQVR YPDVPSFLEY
0801: VHNRQVVHFR SLEKPKDDDF SLELSKLHTY DDVVERVARQ LELDDPAKIR LTSHNCYSQQ PKPQPVKYRV EHLLDMLIHY NQTSDILYYE VLDIPLPELQ
0901: FLKTLKVAFH HPTKDEVVIH SIRLPKNSTI ADVINDLKTK VELSSPNAEL RVLEVFYHKI YKIFPLQEKI ENINDQYWTL RAEEIPEEEK NIGPNDRLIH
1001: VYHFMKDINQ TQQIQNFGDP FFLLIHEGET LAEVKKRIQS KLQVSADEFS KWKFAFISMN RPDYLQDSDV ISTRFQRREV YGAWEQYLGM EHTDTAPKRA
1101: YTVNQNRHSY EKPVKIYN

Best Arabidopsis Sequence Match ( AT5G06600.2 )
(BLAST)

0001: MTMMTPPPVD PEDEEMLVPN SDLVDGPAQP MEVTQPETAA STVENQPAED PPTLKFTWTI PNFSRQNTRK HYSDVFVVGG YKWRILIFPK GNNVDHLSMY
0101: LDVSDAASLP YGWSRYAQFS LAVVNQIHTR YTVRKETQHQ FNARESDWGF TSFMPLSELY DPSRGYLVND TVLVEAEVAV RKVLDYWSYD SKKETGFVGL
0201: KNQGATCYMN SLLQTLYHIP YFRKAVYHMP TTENDAPTAS IPLALQSLFY KLQYNDTSVA TKELTKSFGW DTYDSFMQHD VQELNRVLCE KLEDKMKGTV
0301: VEGTIQQLFE GHHMNYIECI NVDFKSTRKE SFYDLQLDVK GCKDVYASFD KYVEVERLEG DNKYHAEGHG LQDAKKGVLF IDFPPVLQLQ LKRFEYDFMR
0401: DTMVKINDRY EFPLELDLDR EDGKYLSPDA DRSVRNLYTL HSVLVHSGGV HGGHYYAFIR PTLSDQWYKF DDERVTKEDL KRALEEQYGG EEELPQTNPG
0501: FNNNPPFKFT KYSNAYMLVY IRESDKDKII CNVDEKDIAE HLRVRLKKEQ EEKEDKRRYK AQAHLYTIIK VARDEDLKEQ IGKDIYFDLV DHDKVRSFRI
0601: QKQTPFQQFK EEVAKEFGVP VQLQRFWIWA KRQNHTYRPN RPLTPQEELQ PVGQIREASN KANTAELKLF LEVEHLDLRP IPPPEKSKED ILLFFKLYDP
0701: EKAVLSYAGR LMVKSSSKPM DITGKLNEMV GFAPDEEIEL FEEIKFEPCV MCEHLDKKTS FRLCQIEDGD IICFQKPLVN KEIECLYPAV PSFLEYVQNR
0801: QLVRFRALEK PKEDEFVLEL SKQHTYDDVV EKVAEKLGLD DPSKLRLTSH NCYSQQPKPQ PIKYRGVDHL SDMLVHYNQT SDILYYEVLD IPLPELQGLK
0901: TLKVAFHHAT KEEVVIHNIR LPKQSTVGDV INELKTKVEL SHPDAELRLL EVFYHKIYKI FPSTERIENI NDQYWTLRAE EIPEEEKNIG PNDRLILVYH
1001: FAKETGQNQQ VQNFGEPFFL VIHEGETLEE IKNRIQKKLH VSDEDFAKWK FAFMSMGRPE YLQDTDVVYN RFQRRDVYGA FEQYLGLEHA DTTPKRAYAA
1101: NQNRHAYEKP VKIYN

Arabidopsis Description

UBP12Ubiquitin carboxyl-terminal hydrolase 12 [Source:UniProtKB/Swiss-Prot;Acc:Q9FPT1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.