CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2D01G249100.1	Wheat	nucleus	94.19	94.1
TraesCS2A01G246800.3	Wheat	golgi	94.1	94.01
TraesCS2B01G263500.4	Wheat	nucleus	94.01	93.92
Zm00001d007904_P003	Maize	cytosol	97.23	93.63
HORVU2Hr1G058700.4	Barley	cytosol	92.4	92.56
Zm00001d018859_P010	Maize	cytosol	92.93	92.52
EES15989	Sorghum	cytosol	80.23	79.95
EES09985	Sorghum	cytosol	78.98	78.98
KXG33467	Sorghum	nucleus	67.71	67.71
OQU79503	Sorghum	nucleus	9.21	22.74
OQU79121	Sorghum	nucleus	14.49	16.01
EES16279	Sorghum	nucleus	13.6	13.55
EES01550	Sorghum	nucleus	14.04	12.98
KXG22306	Sorghum	nucleus	13.24	11.49
EES07147	Sorghum	nucleus, plastid	14.76	9.91

Protein Annotations

MapMan:14.6.2.3	MapMan:19.2.3.1.1.5	Gene3D:2.60.210.10	Gene3D:3.10.20.90	Gene3D:3.90.70.10	UniProt:A0A1B6Q946
ncoils:Coil	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005515	GO:GO:0006464
GO:GO:0006511	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0016579
GO:GO:0016787	GO:GO:0019538	GO:GO:0036459	InterPro:IPR002083	InterPro:IPR008974	InterPro:IPR028889
EnsemblPlants:KXG34448	ProteinID:KXG34448	ProteinID:KXG34448.1	InterPro:MATH/TRAF_dom	PFAM:PF00443	PFAM:PF00917
PFAM:PF12436	PFAM:PF14533	ScanProsite:PS00972	ScanProsite:PS00973	PFscan:PS50144	PFscan:PS50235
PANTHER:PTHR24006	PANTHER:PTHR24006:SF565	InterPro:Papain_like_cys_pep_sf	InterPro:Peptidase_C19_UCH	SMART:SM00061	EnsemblPlantsGene:SORBI_3002G042600
SUPFAM:SSF49599	SUPFAM:SSF54001	InterPro:TRAF-like	UniParc:UPI00081AB2FC	InterPro:USP7_ICP0-binding_dom	InterPro:USP_C
InterPro:USP_CS	InterPro:USP_dom	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr2:-:4066570..4081679

Molecular Weight (calculated)

131133.0 Da

IEP (calculated)

5.868

GRAVY (calculated)

-0.646

Length

1118 amino acids

Sequence
(BLAST)

0001: MTTSPPPAEQ QQQEEEEVLV PHGPQQELPN GAQPMEVVPA EPAATVENQQ IEDPPISRFT WTIENLSRVS TKKLYSEIFV VGGYKWRILI FPRGNNVEFL
0101: SMYLDVADSG VLPYGWTRYA QFSLSVVNQI HNKFTIRKET QHQFSARESD WGFTSFMPLG ELYNPSRGYL VNDTCIVEAE VAVCKVVDYW SYDSKKETGY
0201: VGLKNQGATC YMNSLLQTLY HIPYFRKAVY HMPTTENDMP SGSIPLALQS LFYKLQYNDS SVSTKELTKS FGWDMHDSFM QHDVQELNRV LSEKLEDKMK
0301: GTVVEGTIQQ LFEGHHMNYI ECINVDFKST RKESFYDLQL DVKGCQDVYA SFDKYVEVER LEGDNKYHAD KHGLQDAKKG VLFIDFPPVL QLQLKRFEYD
0401: FMRDTMVKIN DRYEFPLQLD LDRDDGKYLS PDADRNVRNL YTLHSVLVHS GGVHGGHYYA FIRPTLSDQW FKFDDERVTK EDAKRALEEQ YGGEEELPQT
0501: NPGLNNTPFK FTKYSNAYML VYIRESDKDK IICNVDEKDI AEHLRIRLEK DREEKERRKK EKAEAHLYTI IKVARDDDLK TQIGKDIYFD LVDHDKVPSF
0601: RIQKQMTFAQ FKEEVAKEFG IPTQFQRFWL WAKRQNHTYR PNRPLSPQDE AHTVGQLKEL VNKAHNAELK LFLEVELGLD LKPLPLPDKT REDIFLFFKL
0701: YEPEKEQLRY VGRLFVKASG RPQDILPKLR MLAGFSQDDD IELYEEIKFE PNVMCEYIDN RLLFRSCQLE DGDIICFQKS SKPDSADRYR FPDVPSFLTY
0801: IRNRQVVHFR SLEKPKEDDF CLEMSKIFTY DQVVEKVAEK LGVDDPSKIR LTSHNCYSQQ PKPQPIKYRG VERLLDMLIH YNQTSDILYY EVLDIPLPEL
0901: QALKTLKVTY HHATKDEVSV HSIRLPKNST VGDVLNDIKT KVELSHPNAE LRLLEVFYHK IYKVFAANEK IENINDQYWT LRAEEVPEEE KNLGPFDRLI
1001: HVYHFTKDTQ NQTQVQNFGE PFFMVIREDE ILSSIKERIQ KKLKVPDEDF SKWKFAYISL GRPDYFEDSD TVAVKFQRNM YGAWEQYLGL EHPDTAPRKA
1101: HTINQNRHSF ERPVKIYN

Best Arabidopsis Sequence Match ( AT5G06600.1 )
(BLAST)

0001: MTMMTPPPVD QPEDEEMLVP NSDLVDGPAQ PMEVTQPETA ASTVENQPAE DPPTLKFTWT IPNFSRQNTR KHYSDVFVVG GYKWRILIFP KGNNVDHLSM
0101: YLDVSDAASL PYGWSRYAQF SLAVVNQIHT RYTVRKETQH QFNARESDWG FTSFMPLSEL YDPSRGYLVN DTVLVEAEVA VRKVLDYWSY DSKKETGFVG
0201: LKNQGATCYM NSLLQTLYHI PYFRKAVYHM PTTENDAPTA SIPLALQSLF YKLQYNDTSV ATKELTKSFG WDTYDSFMQH DVQELNRVLC EKLEDKMKGT
0301: VVEGTIQQLF EGHHMNYIEC INVDFKSTRK ESFYDLQLDV KGCKDVYASF DKYVEVERLE GDNKYHAEGH GLQDAKKGVL FIDFPPVLQL QLKRFEYDFM
0401: RDTMVKINDR YEFPLELDLD REDGKYLSPD ADRSVRNLYT LHSVLVHSGG VHGGHYYAFI RPTLSDQWYK FDDERVTKED LKRALEEQYG GEEELPQTNP
0501: GFNNNPPFKF TKYSNAYMLV YIRESDKDKI ICNVDEKDIA EHLRVRLKKE QEEKEDKRRY KAQAHLYTII KVARDEDLKE QIGKDIYFDL VDHDKVRSFR
0601: IQKQTPFQQF KEEVAKEFGV PVQLQRFWIW AKRQNHTYRP NRPLTPQEEL QPVGQIREAS NKANTAELKL FLEVEHLDLR PIPPPEKSKE DILLFFKLYD
0701: PEKAVLSYAG RLMVKSSSKP MDITGKLNEM VGFAPDEEIE LFEEIKFEPC VMCEHLDKKT SFRLCQIEDG DIICFQKPLV NKEIECLYPA VPSFLEYVQN
0801: RQLVRFRALE KPKEDEFVLE LSKQHTYDDV VEKVAEKLGL DDPSKLRLTS HNCYSQQPKP QPIKYRGVDH LSDMLVHYNQ TSDILYYEVL DIPLPELQGL
0901: KTLKVAFHHA TKEEVVIHNI RLPKQSTVGD VINELKTKVE LSHPDAELRL LEVFYHKIYK IFPSTERIEN INDQYWTLRA EEIPEEEKNI GPNDRLILVY
1001: HFAKETGQNQ QVQNFGEPFF LVIHEGETLE EIKNRIQKKL HVSDEDFAKW KFAFMSMGRP EYLQDTDVVY NRFQRRDVYG AFEQYLGLEH ADTTPKRAYA
1101: ANQNRHAYEK PVKIYN

Arabidopsis Description

UBP12Ubiquitin carboxyl-terminal hydrolase 12 [Source:UniProtKB/Swiss-Prot;Acc:Q9FPT1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.