Factsheet for VIT_13s0073g00610.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os12t0489200-01	Rice	cytosol	3.5	90.7
VIT_08s0032g00600.t01	Wine grape	cytosol	89.42	89.34
VIT_06s0009g00960.t01	Wine grape	cytosol	88.34	88.26
GSMUA_Achr5P02720_001	Banana	cytosol	88.25	88.25
GSMUA_Achr4P28400_001	Banana	cytosol	87.26	87.26
GSMUA_Achr10P...	Banana	cytosol	86.64	86.64
Solyc11g006320.1.1	Tomato	cytosol	86.19	86.03
EES15989	Sorghum	cytosol	86.19	85.65
Os12t0489100-01	Rice	cytosol, extracellular, plasma membrane	42.24	85.48
Solyc05g055090.2.1	Tomato	cytosol	85.74	85.43
VIT_12s0121g00410.t01	Wine grape	cytosol	6.73	85.23
GSMUA_Achr4P22710_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	87.62	84.88
HORVU5Hr1G031980.4	Barley	cytosol	84.75	84.38
TraesCS4D01G165800.1	Wheat	unclear	84.66	84.36
TraesCS5A01G105900.1	Wheat	cytosol	84.57	84.27
TraesCS5B01G111000.7	Wheat	cytosol	85.02	84.12
TraesCS4A01G163000.1	Wheat	cytosol	84.22	84.06
TraesCS5D01G123300.4	Wheat	cytosol	84.84	83.94
EES09985	Sorghum	cytosol	84.04	83.81
Zm00001d041035_P002	Maize	cytosol	82.51	80.77
Zm00001d023640_P004	Maize	cytosol	79.64	78.45
HORVU4Hr1G034950.2	Barley	cytosol	78.3	78.09
Zm00001d052943_P023	Maize	plastid	73.18	60.94
VIT_04s0008g03170.t01	Wine grape	mitochondrion	16.95	17.28
VIT_05s0020g04980.t01	Wine grape	nucleus	16.23	15.79
VIT_04s0008g05690.t01	Wine grape	nucleus	18.21	12.06
VIT_11s0016g05880.t01	Wine grape	mitochondrion	14.62	10.74

Protein Annotations

EntrezGene:100252573	wikigene:100252573	MapMan:14.6.2.3	MapMan:19.2.3.1.1.5	Gene3D:2.60.210.10	Gene3D:3.10.20.90
Gene3D:3.90.70.10	ProteinID:CBI24991	ProteinID:CBI24991.3	ncoils:Coil	UniProt:D7T3A6	EMBL:FN595510
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005515	GO:GO:0006464	GO:GO:0006511
GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0016579	GO:GO:0016787
GO:GO:0019538	GO:GO:0036459	InterPro:IPR002083	InterPro:IPR008974	InterPro:IPR028889	EntrezGene:LOC100252573
wikigene:LOC100252573	InterPro:MATH/TRAF_dom	PFAM:PF00443	PFAM:PF00917	PFAM:PF12436	PFAM:PF14533
ScanProsite:PS00972	ScanProsite:PS00973	PFscan:PS50144	PFscan:PS50235	PANTHER:PTHR24006	PANTHER:PTHR24006:SF614
InterPro:Papain_like_cys_pep_sf	InterPro:Peptidase_C19_UCH	SMART:SM00061	SUPFAM:SSF49599	SUPFAM:SSF54001	InterPro:TRAF-like
UniParc:UPI0001BE2446	InterPro:USP7_ICP0-binding_dom	InterPro:USP_C	InterPro:USP_CS	InterPro:USP_dom	ArrayExpress:VIT_13s0073g00610
EnsemblPlantsGene:VIT_13s0073g00610	EnsemblPlants:VIT_13s0073g00610.t01	unigene:Vvi.5940	RefSeq:XP_002263912	RefSeq:XP_002263912.2	SEG:seg

Description

No Description!

Coordinates

chr13:-:14562763..14608332

Molecular Weight (calculated)

130827.0 Da

IEP (calculated)

5.829

GRAVY (calculated)

-0.617

Length

1115 amino acids

Sequence
(BLAST)

0001: MTLMTPPPLD QEDDEMLVPH TDFADGPQPM EVAQPDTASA VDAQTVEDPP SARFTWTIEN FSRLNTKKLY SDVFYVGGYK WRVLIFPKGN NVDHLSMYLD
0101: VADSATLPYG WSRYAQFSLA VINQIHNKFT IRKDTQHQFN ARESDWGFTS FMPLGELYDP ARGYLVNDTC IVEADVAVRR VIDYWTHDSK KETGYVGLKN
0201: QGATCYMNSL LQTLYHIPYF RKAVYHMPTT ENDMPSGSIP LALQSLFYKL QYSDTSVATK ELTKSFGWDT YDSFMQHDVQ ELNRVLCEKL EDKMKGTVVE
0301: GTIQQLFEGH HMNYIECINV DYKSTRKESF YDLQLDVKGC RDVYASFDKY VEVERLEGDN KYHAEIHGLQ DARKGVLFID FPPVLQLQLK RFEYDFMRDT
0401: MVKINDRYEF PLQLDLDREN GKYLSPDADR SVRNLYTLHS VLVHSGGVHG GHYYAYIRPT LSDQWFKFDD ERVTKEDIKR ALEEQYGGEE ELPQTNPGFN
0501: NSPFKFTKYS NAYMLVYIRE SDKEKIICNV DEKDIAEHLR IRLKKEQEEK EQKRKEKAEA HLYTIIKVAR NEDLIEQIGR DIYFDLVDHD KVRSFRIQKQ
0601: TPFNLFKEEV AKEFGIPVQF QRFWLWAKRQ NHTYRPNRPL TLQEEAQSVG QLREVSNKAN HAELKLFLEV ELGQDLRPVP PPEKTKEEIL LFFKLYDPLK
0701: EELRYVGRLF VKGSGKPIEI LSKLNELAGF SPNEEIELFE EIKFEPNVMC EHIDKRLTFR ASQLEDGDII CYQRLLQIDS SQQCRYPDVP SFLEYVHNRQ
0801: VVRFRSLEKP KEDEFCLELS KLFNYDDVVE RVAAHLGLDD SSKIRLTSHN CYSQQPKPQP IKYRGVEHLS DMLLHYNQTS DILYYEVLDI PLPELQGLKT
0901: LKVAFHHATK EEVVIHTIRL PKQSTVGDVI NDLKSKVELS HPNAELRLLE VFYHKIYKIF PLNEKIENIN DQYWTLRAEE IPEEEKNLGP HDRLIHVYHF
1001: MKDTTQNQVQ VQNFGEPFFL VIHEGETLAE VKVRIQKKLQ VPDEEFSKWK FAFLSLGRPE YLQDSDIVSS RFQRRDVYGA WEQYLGLEHS DNAPKRSYAA
1101: NQNRHTFEKP VKIYN

Best Arabidopsis Sequence Match ( AT5G06600.2 )
(BLAST)

0001: MTMMTPPPVD PEDEEMLVPN SDLVDGPAQP MEVTQPETAA STVENQPAED PPTLKFTWTI PNFSRQNTRK HYSDVFVVGG YKWRILIFPK GNNVDHLSMY
0101: LDVSDAASLP YGWSRYAQFS LAVVNQIHTR YTVRKETQHQ FNARESDWGF TSFMPLSELY DPSRGYLVND TVLVEAEVAV RKVLDYWSYD SKKETGFVGL
0201: KNQGATCYMN SLLQTLYHIP YFRKAVYHMP TTENDAPTAS IPLALQSLFY KLQYNDTSVA TKELTKSFGW DTYDSFMQHD VQELNRVLCE KLEDKMKGTV
0301: VEGTIQQLFE GHHMNYIECI NVDFKSTRKE SFYDLQLDVK GCKDVYASFD KYVEVERLEG DNKYHAEGHG LQDAKKGVLF IDFPPVLQLQ LKRFEYDFMR
0401: DTMVKINDRY EFPLELDLDR EDGKYLSPDA DRSVRNLYTL HSVLVHSGGV HGGHYYAFIR PTLSDQWYKF DDERVTKEDL KRALEEQYGG EEELPQTNPG
0501: FNNNPPFKFT KYSNAYMLVY IRESDKDKII CNVDEKDIAE HLRVRLKKEQ EEKEDKRRYK AQAHLYTIIK VARDEDLKEQ IGKDIYFDLV DHDKVRSFRI
0601: QKQTPFQQFK EEVAKEFGVP VQLQRFWIWA KRQNHTYRPN RPLTPQEELQ PVGQIREASN KANTAELKLF LEVEHLDLRP IPPPEKSKED ILLFFKLYDP
0701: EKAVLSYAGR LMVKSSSKPM DITGKLNEMV GFAPDEEIEL FEEIKFEPCV MCEHLDKKTS FRLCQIEDGD IICFQKPLVN KEIECLYPAV PSFLEYVQNR
0801: QLVRFRALEK PKEDEFVLEL SKQHTYDDVV EKVAEKLGLD DPSKLRLTSH NCYSQQPKPQ PIKYRGVDHL SDMLVHYNQT SDILYYEVLD IPLPELQGLK
0901: TLKVAFHHAT KEEVVIHNIR LPKQSTVGDV INELKTKVEL SHPDAELRLL EVFYHKIYKI FPSTERIENI NDQYWTLRAE EIPEEEKNIG PNDRLILVYH
1001: FAKETGQNQQ VQNFGEPFFL VIHEGETLEE IKNRIQKKLH VSDEDFAKWK FAFMSMGRPE YLQDTDVVYN RFQRRDVYGA FEQYLGLEHA DTTPKRAYAA
1101: NQNRHAYEKP VKIYN

Arabidopsis Description

UBP12Ubiquitin carboxyl-terminal hydrolase 12 [Source:UniProtKB/Swiss-Prot;Acc:Q9FPT1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.