Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| HORVU4Hr1G035250.1 | |
| HORVU5Hr1G122680.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G77300.1 | HORVU5Hr1G122680.1 | AT4G00650.1 | 20711170 |
| AT1G77300.1 | HORVU4Hr1G035250.1 | AT4G26630.1 | 25387881 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2A01G005000.1 | Wheat | nucleus | 86.92 | 87.02 |
| TraesCS2B01G015500.1 | Wheat | nucleus | 85.76 | 86.57 |
| TraesCS2D01G007100.1 | Wheat | nucleus | 87.31 | 86.35 |
| OQU85110 | Sorghum | nucleus | 50.33 | 47.9 |
| Zm00001d016804_P002 | Maize | nucleus | 44.21 | 44.62 |
| VIT_18s0001g01700.t01 | Wine grape | nucleus | 19.92 | 34.64 |
| HORVU3Hr1G083480.1 | Barley | nucleus, peroxisome | 4.19 | 32.07 |
| Solyc04g057880.2.1 | Tomato | nucleus | 22.52 | 29.23 |
| Bra015678.1-P | Field mustard | nucleus | 23.29 | 25.47 |
| CDX87527 | Canola | nucleus | 23.29 | 25.47 |
| CDX88357 | Canola | nucleus | 23.18 | 25.35 |
| Solyc06g059960.2.1 | Tomato | nucleus | 23.23 | 25.29 |
| GSMUA_Achr9P08570_001 | Banana | nucleus | 28.2 | 25.22 |
| HORVU5Hr1G054880.2 | Barley | mitochondrion | 5.19 | 24.54 |
| HORVU7Hr1G103420.7 | Barley | nucleus | 5.57 | 24.46 |
| HORVU2Hr1G074910.11 | Barley | cytosol, nucleus | 6.68 | 24.01 |
| KRH53306 | Soybean | nucleus | 26.27 | 23.33 |
| KRH64610 | Soybean | nucleus | 26.82 | 23.32 |
| AT1G77300.1 | Thale cress | nucleus | 22.96 | 23.05 |
| HORVU7Hr1G026910.29 | Barley | cytosol, nucleus | 4.97 | 11.44 |
| HORVU7Hr1G026840.1 | Barley | cytosol, mitochondrion, nucleus | 5.52 | 10.88 |
| HORVU4Hr1G053740.8 | Barley | cytosol, mitochondrion, nucleus | 5.19 | 10.31 |
| HORVU3Hr1G027580.1 | Barley | plastid | 4.86 | 8.83 |
| HORVU3Hr1G059080.11 | Barley | cytosol, mitochondrion, nucleus, plastid | 4.86 | 8.59 |
| HORVU5Hr1G051100.8 | Barley | nucleus | 5.19 | 8.18 |
| HORVU5Hr1G088420.21 | Barley | plastid | 7.67 | 7.12 |
| HORVU0Hr1G020960.1 | Barley | nucleus | 1.05 | 4.44 |
Protein Annotations
| KEGG:00310+2.1.1.43 | MapMan:12.3.3.4 | Gene3D:2.170.270.10 | Gene3D:3.30.40.100 | UniProt:A0A287GVG9 | InterPro:AWS_dom |
| ncoils:Coil | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006464 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0008168 | GO:GO:0008270 | GO:GO:0009987 | GO:GO:0016043 | GO:GO:0016740 | GO:GO:0018024 |
| GO:GO:0019538 | GO:GO:0032259 | GO:GO:0034968 | EnsemblPlantsGene:HORVU2Hr1G000940 | EnsemblPlants:HORVU2Hr1G000940.11 | InterPro:IPR001214 |
| InterPro:IPR003616 | InterPro:IPR006560 | InterPro:IPR011124 | PFAM:PF00856 | PFAM:PF07496 | PFscan:PS50280 |
| PFscan:PS50868 | PFscan:PS51050 | PFscan:PS51215 | PANTHER:PTHR22884 | PANTHER:PTHR22884:SF466 | InterPro:Post-SET_dom |
| InterPro:SET_dom | SMART:SM00317 | SMART:SM00508 | SMART:SM00570 | SUPFAM:SSF82199 | UniParc:UPI000B480920 |
| InterPro:Znf_CW | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chrchr2H:+:2084734..2097842
Molecular Weight (calculated)
200211.0 Da
IEP (calculated)
7.032
GRAVY (calculated)
-0.727
Length
1812 amino acids
Sequence
(BLAST)
(BLAST)
0001: LVAPSGGGSQ ANNSGCIYDM VDRAAEASQC ELAADGVVFW DEALVKTASP QGPQMRCKEL RCYNDSPVMC LKKDVNCELE KVALLPKLDA EVSSRAHQDS
0101: VPSSSGFDLA VSLDCKAGSE IGQISQHETG MERVPCGSQG GAMLSRERGF WKQAIGDENQ FSSMEGCSEN GGLPDLGKLD TEKFPQDADG LSSINANHEL
0201: GRDCFLPNID EKVSFPVDEA LAPSFYQSPM DVIVEDSKSC IQKLTQDSLE GDMLSCEREA SFPTEASGNE NQHHRMAVSK GQIPSICKDA NSASLNACGL
0301: FPEIEVLRQQ ADKEYKVFEL PPEIYLAGSS YNPPFLDGLC RSGKESSAVC LGHQDSSGVK SRCQDHLVQE LNAYNSFVDK PRSADFVENG NYEESQNQIS
0401: ESLNASKRRN PRRAASSRNY SLVEHDQINQ GSSSTCKSKK VESSCSLVES TLIKFPNKTT KVRSGINRPQ KLTAWGSLEK LTDGFGQNCE PSTSNSHLIC
0501: LENCGRSNKR SGKKEQPIVR KARSSRCSKY KFPAFSVTRY APDELNGEPT FSVMDGTYGS SEGYVGNFPR LAPHALLNVS DDPHKTAQHM SIQTDMHQLD
0601: RCLESVTQET CPAYIRGEFA KSIAQPSLNN AGVGFSPDSV LEVASVTCEN NTSASHDVKL RGNPSYAAAL TESDLHASDL STSYSGKNHA SSSTDFEQQP
0701: KTVRGDENTR SEEINQSHAI IGYVGEGKLQ GLKRSNEARK TKMLEKQKGR KKDGIKGNNI RDGSSTKISS REASKYRAFS DDPSSLVSSG PLKFSSCFEV
0801: VTSATQGISM HEHGWVQGPS VTGKEKTSSL NNVKSPRCKK SGGLRGKKDM VQDPHMKQKT KNKNIADDIL IDSGSSILPY QLATDLAASH TNEQSYYRSP
0901: AIEFTFQNPA AISTELPGNA ACSTGGASVP QPKRAAWACC DDCQKWRCIP SELADVIGEN RWTCKDNDDK AFADCSIPQA KTNAEINAEL ELSDASADEA
1001: DKDGSNSKAS RAPSWTNLRS NAYLHRNRRN QSIDESMVCN CKPPQDGRMG CRDGCLNRML NIECAKRTCP CEEQCSNQQF QRRNYAKIEW FHSGKKGYGL
1101: QLLEEVSEGR FLIEYVGEVL DITTYESRQR DYASKGKKHF YFMALDGGEV IDACTKGNLG RFINHSCSPN CRTEKWMVNG EVCIGIFAMR NIKKGEELTF
1201: DYNYVRVSGA APQKCFCGTA KCRGYIGGDI SGSGIITQHD AEAEYFEPMV TCKDAEEMLG NACSHGANPS VVELEHETSI QQEDSNNCPP VTPDSEPHQT
1301: SPILFDDSEL ENSWEMWSPQ DAEDPTRTPV HVPRTIDSTL QQLPVYDPQP SEFLPKAPNT MDGPKAPNVM NQSAPSSDLG HNLVVPDFHA KKNNLKDHRD
1401: VKSSLCSIDN ENTPRVEARL NNLLDRDGGI TRRKDSANEY LKLLAFVIPA AHDNTTEERE NAATPAERDK AGGTSKSARD LSLILDALLK TKSRSVLLDI
1501: INMNGFQMLH NILKQNRDTF LRRPIIRKLL KVLEFLALKG ILRAEKINEK APREKMERFR DSMLKLTWHS DKQVQTMARQ FCENWIHPYM DGPVSTSKWH
1601: TDSYSTRRRK RKSRWDYQPE YHYKMVGLQV RKVYGEFGLQ AGLIRNKSQP VIGSNSTGAE DDVPPGFEPQ QGRSVAPGFC HPNLSISYGI PVALVQHLGT
1701: PEVEGGGNRG QKWKVAPGVP FSSFPQLQRG SVCPSTSTQM SCNDAMRQNN NSGYRGRGFD RGGRVQRNGR NGARTRYPYD QGRRFPSNHH RSERWQPWPQ
1801: EQDGGSGSRG RQ
0101: VPSSSGFDLA VSLDCKAGSE IGQISQHETG MERVPCGSQG GAMLSRERGF WKQAIGDENQ FSSMEGCSEN GGLPDLGKLD TEKFPQDADG LSSINANHEL
0201: GRDCFLPNID EKVSFPVDEA LAPSFYQSPM DVIVEDSKSC IQKLTQDSLE GDMLSCEREA SFPTEASGNE NQHHRMAVSK GQIPSICKDA NSASLNACGL
0301: FPEIEVLRQQ ADKEYKVFEL PPEIYLAGSS YNPPFLDGLC RSGKESSAVC LGHQDSSGVK SRCQDHLVQE LNAYNSFVDK PRSADFVENG NYEESQNQIS
0401: ESLNASKRRN PRRAASSRNY SLVEHDQINQ GSSSTCKSKK VESSCSLVES TLIKFPNKTT KVRSGINRPQ KLTAWGSLEK LTDGFGQNCE PSTSNSHLIC
0501: LENCGRSNKR SGKKEQPIVR KARSSRCSKY KFPAFSVTRY APDELNGEPT FSVMDGTYGS SEGYVGNFPR LAPHALLNVS DDPHKTAQHM SIQTDMHQLD
0601: RCLESVTQET CPAYIRGEFA KSIAQPSLNN AGVGFSPDSV LEVASVTCEN NTSASHDVKL RGNPSYAAAL TESDLHASDL STSYSGKNHA SSSTDFEQQP
0701: KTVRGDENTR SEEINQSHAI IGYVGEGKLQ GLKRSNEARK TKMLEKQKGR KKDGIKGNNI RDGSSTKISS REASKYRAFS DDPSSLVSSG PLKFSSCFEV
0801: VTSATQGISM HEHGWVQGPS VTGKEKTSSL NNVKSPRCKK SGGLRGKKDM VQDPHMKQKT KNKNIADDIL IDSGSSILPY QLATDLAASH TNEQSYYRSP
0901: AIEFTFQNPA AISTELPGNA ACSTGGASVP QPKRAAWACC DDCQKWRCIP SELADVIGEN RWTCKDNDDK AFADCSIPQA KTNAEINAEL ELSDASADEA
1001: DKDGSNSKAS RAPSWTNLRS NAYLHRNRRN QSIDESMVCN CKPPQDGRMG CRDGCLNRML NIECAKRTCP CEEQCSNQQF QRRNYAKIEW FHSGKKGYGL
1101: QLLEEVSEGR FLIEYVGEVL DITTYESRQR DYASKGKKHF YFMALDGGEV IDACTKGNLG RFINHSCSPN CRTEKWMVNG EVCIGIFAMR NIKKGEELTF
1201: DYNYVRVSGA APQKCFCGTA KCRGYIGGDI SGSGIITQHD AEAEYFEPMV TCKDAEEMLG NACSHGANPS VVELEHETSI QQEDSNNCPP VTPDSEPHQT
1301: SPILFDDSEL ENSWEMWSPQ DAEDPTRTPV HVPRTIDSTL QQLPVYDPQP SEFLPKAPNT MDGPKAPNVM NQSAPSSDLG HNLVVPDFHA KKNNLKDHRD
1401: VKSSLCSIDN ENTPRVEARL NNLLDRDGGI TRRKDSANEY LKLLAFVIPA AHDNTTEERE NAATPAERDK AGGTSKSARD LSLILDALLK TKSRSVLLDI
1501: INMNGFQMLH NILKQNRDTF LRRPIIRKLL KVLEFLALKG ILRAEKINEK APREKMERFR DSMLKLTWHS DKQVQTMARQ FCENWIHPYM DGPVSTSKWH
1601: TDSYSTRRRK RKSRWDYQPE YHYKMVGLQV RKVYGEFGLQ AGLIRNKSQP VIGSNSTGAE DDVPPGFEPQ QGRSVAPGFC HPNLSISYGI PVALVQHLGT
1701: PEVEGGGNRG QKWKVAPGVP FSSFPQLQRG SVCPSTSTQM SCNDAMRQNN NSGYRGRGFD RGGRVQRNGR NGARTRYPYD QGRRFPSNHH RSERWQPWPQ
1801: EQDGGSGSRG RQ
001: MQFSCDPDQE GDELPQYEHI YQNDFSYRKH KKQKEEDISI CECKFDFGDP DSACGERCLN VITNTECTPG YCPCGVYCKN QKFQKCEYAK TKLIKCEGRG
101: WGLVALEEIK AGQFIMEYCG EVISWKEAKK RAQTYETHGV KDAYIISLNA SEAIDATKKG SLARFINHSC RPNCETRKWN VLGEVRVGIF AKESISPRTE
201: LAYDYNFEWY GGAKVRCLCG AVACSGFLGA KSRGFQEDTY VWEDGDDRYS VDKIPVYDSA EDELTSEPSK NGESNTNEEK EKDISTENHL ESTALNIQQQ
301: SDSTPTPMEE DVVTETVKTE TSEDMKLLSQ NSQEDSSPKT AIVSRVHGNI SKIKSESLPK KRGRPFSGGK TKNVAQKHVD IANVVQLLAT KEAQDEVLKY
401: EEVKKEAAVR LSSLYDEIRP AIEEHERDSQ DSVATSVAEK WIQASCNKLK AEFDLYSSVI KNIASTPIKP QDTKTKVAEA GNEDHIKLLE AK
101: WGLVALEEIK AGQFIMEYCG EVISWKEAKK RAQTYETHGV KDAYIISLNA SEAIDATKKG SLARFINHSC RPNCETRKWN VLGEVRVGIF AKESISPRTE
201: LAYDYNFEWY GGAKVRCLCG AVACSGFLGA KSRGFQEDTY VWEDGDDRYS VDKIPVYDSA EDELTSEPSK NGESNTNEEK EKDISTENHL ESTALNIQQQ
301: SDSTPTPMEE DVVTETVKTE TSEDMKLLSQ NSQEDSSPKT AIVSRVHGNI SKIKSESLPK KRGRPFSGGK TKNVAQKHVD IANVVQLLAT KEAQDEVLKY
401: EEVKKEAAVR LSSLYDEIRP AIEEHERDSQ DSVATSVAEK WIQASCNKLK AEFDLYSSVI KNIASTPIKP QDTKTKVAEA GNEDHIKLLE AK
Arabidopsis Description
ASHH1SET domain group 26 [Source:TAIR;Acc:AT1G76710]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.