Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, peroxisome, nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- peroxisome 1
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| HORVU3Hr1G083480.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G02470.1 | HORVU3Hr1G083480.1 | AT4G30860.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1D01G262200.1 | Wheat | peroxisome | 95.45 | 96.18 |
| TraesCS1B01G272800.3 | Wheat | peroxisome | 95.45 | 95.82 |
| TraesCS1A01G262200.1 | Wheat | peroxisome | 78.03 | 94.06 |
| Zm00001d010241_P002 | Maize | cytosol | 55.3 | 90.12 |
| EES18243 | Sorghum | nucleus | 86.74 | 89.11 |
| Os05t0419100-01 | Rice | nucleus | 86.74 | 88.76 |
| Zm00001d038208_P001 | Maize | nucleus | 84.47 | 87.11 |
| GSMUA_Achr8P32300_001 | Banana | nucleus | 76.89 | 79.3 |
| CDY17594 | Canola | cytosol | 34.85 | 77.97 |
| HORVU4Hr1G015060.3 | Barley | nucleus | 71.97 | 74.8 |
| KRH51269 | Soybean | nucleus | 68.94 | 72.51 |
| KRH01887 | Soybean | nucleus | 68.94 | 72.22 |
| Solyc01g102760.2.1 | Tomato | nucleus | 67.42 | 71.77 |
| PGSC0003DMT400047018 | Potato | nucleus | 66.67 | 70.97 |
| Solyc01g102750.2.1 | Tomato | nucleus | 66.67 | 70.68 |
| VIT_12s0035g01980.t01 | Wine grape | nucleus | 67.42 | 70.36 |
| AT2G02470.1 | Thale cress | cytosol, nucleus, plastid | 67.8 | 69.92 |
| Bra024817.1-P | Field mustard | nucleus | 65.15 | 69.92 |
| Bra017415.1-P | Field mustard | cytosol, nucleus, plastid | 64.39 | 69.67 |
| CDY04130 | Canola | cytosol, nucleus, plastid | 64.39 | 69.67 |
| CDY17436 | Canola | cytosol, nucleus, plastid | 64.39 | 69.67 |
| CDY03049 | Canola | cytosol | 64.02 | 68.98 |
| AT1G14510.1 | Thale cress | nucleus | 63.26 | 66.27 |
| CDX81645 | Canola | cytosol | 60.98 | 66.26 |
| CDY17593 | Canola | cytosol | 29.55 | 66.1 |
| Bra026825.1-P | Field mustard | nucleus | 60.61 | 65.57 |
| CDY53545 | Canola | cytosol | 60.23 | 65.43 |
| CDX84026 | Canola | nucleus | 60.98 | 64.4 |
| CDX96851 | Canola | cytosol | 60.61 | 64.0 |
| Bra016698.1-P | Field mustard | cytosol | 60.61 | 64.0 |
| Bra026210.1-P | Field mustard | nucleus | 59.09 | 62.4 |
| CDY65375 | Canola | nucleus | 57.58 | 62.3 |
| CDY45267 | Canola | nucleus | 47.35 | 61.27 |
| HORVU3Hr1G090540.1 | Barley | nucleus | 80.68 | 60.86 |
| HORVU2Hr1G052960.2 | Barley | cytosol | 51.52 | 55.28 |
| HORVU2Hr1G031990.2 | Barley | nucleus | 60.98 | 53.14 |
| HORVU5Hr1G112420.6 | Barley | nucleus | 46.21 | 44.36 |
| HORVU1Hr1G024210.1 | Barley | nucleus | 53.41 | 41.59 |
| HORVU0Hr1G025310.1 | Barley | plastid | 20.08 | 31.74 |
| HORVU2Hr1G077670.3 | Barley | nucleus | 42.05 | 31.27 |
| HORVU7Hr1G021380.1 | Barley | plastid | 22.35 | 30.1 |
| HORVU5Hr1G059130.2 | Barley | nucleus | 17.05 | 30.0 |
Protein Annotations
| MapMan:15.5.8 | Gene3D:3.30.40.10 | EMBL:AK369402 | InterPro:Alfin | UniProt:F2DZT1 | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0042393 | GO:GO:0046872 | EnsemblPlantsGene:HORVU1Hr1G064250 | EnsemblPlants:HORVU1Hr1G064250.4 |
| InterPro:IPR013083 | InterPro:IPR019787 | PFAM:PF00628 | PFAM:PF12165 | ScanProsite:PS01359 | PFscan:PS50016 |
| PANTHER:PTHR12321 | PANTHER:PTHR12321:SF77 | SMART:SM00249 | SUPFAM:SSF57903 | UniParc:UPI0001CACC17 | InterPro:Zinc_finger_PHD-type_CS |
| InterPro:Znf_FYVE_PHD | InterPro:Znf_PHD | InterPro:Znf_PHD-finger | InterPro:Znf_RING/FYVE/PHD | SEG:seg | : |
Description
Predicted protein [Source:UniProtKB/TrEMBL;Acc:F2DZT1]
Coordinates
chrchr1H:+:459691476..459698658
Molecular Weight (calculated)
29827.0 Da
IEP (calculated)
5.497
GRAVY (calculated)
-0.796
Length
264 amino acids
Sequence
(BLAST)
(BLAST)
001: MDVGAGAGAP YASRTAEEVF RDFRGRRAGM IKALTQEVDK FYQLCDPEKE NLCLYGYPNE TWEVTLPAEE VPPEIPEPAL GINFARDGMN EKDWLALVAV
101: HSDSWLLAVS FYFAARFGFD KEARRRLFNM INNLPTIFEV VTGAAKKQTK EKAPNTNTTH KSNNNKPSMK TLSRPESQSK PPKMAAPPKD EDESGEDYGE
201: EEEEERDNTL CGTCGTNGGK DEFWICCDNC ERWYHGKCVK ITPARAEHIK HYKCPDCSNK RARV
101: HSDSWLLAVS FYFAARFGFD KEARRRLFNM INNLPTIFEV VTGAAKKQTK EKAPNTNTTH KSNNNKPSMK TLSRPESQSK PPKMAAPPKD EDESGEDYGE
201: EEEEERDNTL CGTCGTNGGK DEFWICCDNC ERWYHGKCVK ITPARAEHIK HYKCPDCSNK RARV
001: MEGITHPIPR TVEEVFSDFR GRRAGLIKAL TNDMVKFYQT CDPEKENLCL YGLPNETWEV NLPVEEVPPE LPEPALGINF ARDGMQEKDW VSLVAVHSDS
101: WLLSVAFYFG ARFGFGKNER KRLFQMINEL PTIFEVVSGN AKQSKDLSVN NNNSKSKPSG VKSRQSESLS KVAKMSSPPP KEEEEEEDES EDESEDDEQG
201: AVCGACGDNY GTDEFWICCD ACEKWFHGKC VKITPAKAEH IKHYKCPTCS NKRARP
101: WLLSVAFYFG ARFGFGKNER KRLFQMINEL PTIFEVVSGN AKQSKDLSVN NNNSKSKPSG VKSRQSESLS KVAKMSSPPP KEEEEEEDES EDESEDDEQG
201: AVCGACGDNY GTDEFWICCD ACEKWFHGKC VKITPAKAEH IKHYKCPTCS NKRARP
Arabidopsis Description
AL6AL6 [Source:UniProtKB/TrEMBL;Acc:A0A178VQJ7]
SUBAcon: [plastid,nucleus,cytosol]
SUBAcon: [plastid,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.