Subcellular Localization
min:
: max
Winner_takes_all: peroxisome
Predictor Summary:
Predictor Summary:
- peroxisome 2
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1D01G262200.1 | Wheat | peroxisome | 97.72 | 81.68 |
| TraesCS1B01G272800.3 | Wheat | peroxisome | 97.72 | 81.37 |
| HORVU1Hr1G064250.4 | Barley | mitochondrion, nucleus, peroxisome | 94.06 | 78.03 |
| EES18243 | Sorghum | nucleus | 88.58 | 75.49 |
| Os05t0419100-01 | Rice | nucleus | 88.13 | 74.81 |
| Zm00001d038208_P001 | Maize | nucleus | 85.39 | 73.05 |
| TraesCS3A01G403600.1 | Wheat | cytosol | 80.82 | 67.3 |
| Zm00001d010241_P002 | Maize | cytosol | 49.77 | 67.28 |
| CDY17593 | Canola | cytosol | 35.16 | 65.25 |
| GSMUA_Achr8P32300_001 | Banana | nucleus | 75.8 | 64.84 |
| CDY45267 | Canola | nucleus | 57.99 | 62.25 |
| TraesCS4A01G227900.1 | Wheat | peroxisome | 72.15 | 62.2 |
| KRH51269 | Soybean | nucleus | 69.41 | 60.56 |
| Solyc01g102760.2.1 | Tomato | nucleus | 68.04 | 60.08 |
| PGSC0003DMT400047018 | Potato | nucleus | 68.04 | 60.08 |
| KRH01887 | Soybean | nucleus | 68.95 | 59.92 |
| Solyc01g102750.2.1 | Tomato | nucleus | 68.04 | 59.84 |
| CDY04130 | Canola | cytosol, nucleus, plastid | 64.84 | 58.2 |
| CDY17436 | Canola | cytosol, nucleus, plastid | 64.84 | 58.2 |
| Bra017415.1-P | Field mustard | cytosol, nucleus, plastid | 64.84 | 58.2 |
| Bra024817.1-P | Field mustard | nucleus | 65.3 | 58.13 |
| AT2G02470.1 | Thale cress | cytosol, nucleus, plastid | 67.58 | 57.81 |
| VIT_12s0035g01980.t01 | Wine grape | nucleus | 66.67 | 57.71 |
| CDY03049 | Canola | cytosol | 63.93 | 57.14 |
| AT1G14510.1 | Thale cress | nucleus | 63.93 | 55.56 |
| CDX81645 | Canola | cytosol | 61.64 | 55.56 |
| Bra026825.1-P | Field mustard | nucleus | 61.19 | 54.92 |
| CDX84026 | Canola | nucleus | 62.56 | 54.8 |
| CDY53545 | Canola | cytosol | 60.73 | 54.73 |
| Bra016698.1-P | Field mustard | cytosol | 62.1 | 54.4 |
| CDX96851 | Canola | cytosol | 62.1 | 54.4 |
| CDY17594 | Canola | cytosol | 29.22 | 54.24 |
| Bra026210.1-P | Field mustard | nucleus | 60.27 | 52.8 |
| CDY65375 | Canola | nucleus | 58.45 | 52.46 |
| TraesCS2A01G172100.2 | Wheat | nucleus | 63.47 | 50.92 |
| TraesCS1A01G110200.1 | Wheat | nucleus | 54.79 | 46.69 |
| TraesCS4A01G397400.1 | Wheat | cytosol, nucleus, plastid | 34.7 | 34.7 |
| TraesCS7A01G097400.1 | Wheat | cytosol | 34.25 | 34.25 |
| TraesCS4A01G397500.1 | Wheat | cytosol | 32.88 | 32.88 |
| TraesCS2A01G312700.1 | Wheat | nucleus | 41.1 | 31.8 |
Protein Annotations
| MapMan:15.5.8 | Gene3D:3.30.40.10 | InterPro:Alfin | ncoils:Coil | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | GO:GO:0042393 | InterPro:IPR013083 | InterPro:IPR019787 | PFAM:PF00628 | PFAM:PF12165 |
| ScanProsite:PS01359 | PFscan:PS50016 | PANTHER:PTHR12321 | PANTHER:PTHR12321:SF77 | SMART:SM00249 | SUPFAM:SSF57903 |
| EnsemblPlantsGene:TraesCS1A01G262200 | EnsemblPlants:TraesCS1A01G262200.1 | InterPro:Zinc_finger_PHD-type_CS | InterPro:Znf_FYVE_PHD | InterPro:Znf_PHD | InterPro:Znf_PHD-finger |
| InterPro:Znf_RING/FYVE/PHD | TIGR:cd15613 | SEG:seg | : | : | : |
Description
No Description!
Coordinates
chr1A:+:456926478..456931562
Molecular Weight (calculated)
24974.3 Da
IEP (calculated)
5.448
GRAVY (calculated)
-0.811
Length
219 amino acids
Sequence
(BLAST)
(BLAST)
001: MFIRTEKENL CLYGYPNETW EVTLPAEEVP PEIPEPALGI NFARDGMNEK DWLALVAVHS DSWLLAVSFY FAARFGFDKE ARRRLFNMIN NLPTIFEVVT
101: GAAKKQIKEK APNSTHKSNN KPSMKTYSKP ESQSKAPKIA APPKDEDESG EDYGEEEEEE RDNTLCGTCG TNDGKDEFWI CCDNCERWYH GKCVKITPAR
201: AEHIKHYKCP DCSNKRARA
101: GAAKKQIKEK APNSTHKSNN KPSMKTYSKP ESQSKAPKIA APPKDEDESG EDYGEEEEEE RDNTLCGTCG TNDGKDEFWI CCDNCERWYH GKCVKITPAR
201: AEHIKHYKCP DCSNKRARA
001: MCFEKQNLCL YGFPNEVWEV NLPAEEVPPE LPEPALGINF ARDGMQERNW LSLVAVHSDA WLLSVSFYFG SRFGFDRADR KRLFSMINEV PTVYEVVTGN
101: AEKQTKEMPS SANQNGNRSK SNSKMRGLES KSSKTIHAKD EEEGLELEEG EEEEDEDEDE HGETLCGACG DNYASDEFWI CCDMCEKWFH GECVKITPAR
201: AEHIKHYKCP TCSNKRARP
101: AEKQTKEMPS SANQNGNRSK SNSKMRGLES KSSKTIHAKD EEEGLELEEG EEEEDEDEDE HGETLCGACG DNYASDEFWI CCDMCEKWFH GECVKITPAR
201: AEHIKHYKCP TCSNKRARP
Arabidopsis Description
AL5PHD finger protein ALFIN-LIKE 5 [Source:UniProtKB/Swiss-Prot;Acc:Q5XEM9]
SUBAcon: [cytosol,nucleus,plastid]
SUBAcon: [cytosol,nucleus,plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.