Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Bra010270.1-P |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G02470.1 | Bra010270.1-P | AT4G30860.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY17593 | Canola | cytosol | 47.56 | 99.15 |
| CDY17594 | Canola | cytosol | 47.15 | 98.31 |
| CDY03049 | Canola | cytosol | 93.5 | 93.88 |
| Bra017415.1-P | Field mustard | cytosol, nucleus, plastid | 87.8 | 88.52 |
| AT2G02470.1 | Thale cress | cytosol, nucleus, plastid | 89.84 | 86.33 |
| KRH51269 | Soybean | nucleus | 79.67 | 78.09 |
| Bra026825.1-P | Field mustard | nucleus | 77.24 | 77.87 |
| Solyc01g102760.2.1 | Tomato | nucleus | 78.46 | 77.82 |
| KRH01887 | Soybean | nucleus | 79.67 | 77.78 |
| GSMUA_AchrUn_... | Banana | cytosol | 38.21 | 77.69 |
| Bra016698.1-P | Field mustard | cytosol | 78.46 | 77.2 |
| VIT_12s0035g01980.t01 | Wine grape | nucleus | 79.27 | 77.08 |
| PGSC0003DMT400047018 | Potato | nucleus | 76.42 | 75.81 |
| Bra006562.1-P | Field mustard | cytosol | 21.54 | 75.71 |
| Solyc01g102750.2.1 | Tomato | nucleus | 76.42 | 75.5 |
| Zm00001d010241_P002 | Maize | cytosol | 47.56 | 72.22 |
| GSMUA_Achr10P... | Banana | nucleus | 72.76 | 70.47 |
| EES08261 | Sorghum | nucleus | 72.36 | 70.08 |
| GSMUA_Achr3P16750_001 | Banana | nucleus | 71.54 | 69.57 |
| Os11t0244800-01 | Rice | nucleus | 71.54 | 69.29 |
| TraesCS4B01G088200.1 | Wheat | nucleus | 71.54 | 69.29 |
| GSMUA_Achr7P02940_001 | Banana | nucleus | 71.14 | 69.17 |
| TraesCS4A01G227900.1 | Wheat | peroxisome | 71.14 | 68.9 |
| TraesCS4D01G085300.1 | Wheat | peroxisome | 71.14 | 68.9 |
| GSMUA_Achr2P05660_001 | Banana | nucleus | 70.73 | 68.77 |
| GSMUA_Achr8P32300_001 | Banana | nucleus | 71.54 | 68.75 |
| GSMUA_Achr11P... | Banana | nucleus | 70.33 | 68.65 |
| HORVU4Hr1G015060.3 | Barley | nucleus | 70.33 | 68.11 |
| GSMUA_Achr6P28820_001 | Banana | nucleus | 69.92 | 67.98 |
| Zm00001d038208_P001 | Maize | nucleus | 69.92 | 67.19 |
| EES18243 | Sorghum | nucleus | 69.92 | 66.93 |
| Bra026210.1-P | Field mustard | nucleus | 67.89 | 66.8 |
| Os05t0419100-01 | Rice | nucleus | 69.92 | 66.67 |
| Bra036568.1-P | Field mustard | cytosol | 68.7 | 65.76 |
| EES05274 | Sorghum | nucleus | 68.29 | 65.62 |
| TraesCS3B01G437100.1 | Wheat | cytosol | 69.92 | 65.4 |
| TraesCS3A01G403600.1 | Wheat | cytosol | 69.92 | 65.4 |
| TraesCS3D01G398800.2 | Wheat | cytosol | 69.92 | 65.4 |
| TraesCS1A01G262200.1 | Wheat | peroxisome | 58.13 | 65.3 |
| TraesCS1D01G262200.1 | Wheat | peroxisome | 69.51 | 65.27 |
| HORVU1Hr1G064250.4 | Barley | mitochondrion, nucleus, peroxisome | 69.92 | 65.15 |
| TraesCS1B01G272800.3 | Wheat | peroxisome | 69.51 | 65.02 |
| Bra034950.1-P | Field mustard | nucleus | 67.07 | 64.96 |
| Bra020107.1-P | Field mustard | cytosol | 67.07 | 64.96 |
| OQU78932 | Sorghum | nucleus | 68.29 | 64.86 |
| Bra009887.1-P | Field mustard | nucleus | 68.29 | 64.37 |
| KXG33847 | Sorghum | nucleus | 66.67 | 64.06 |
| Zm00001d042582_P001 | Maize | cytosol, mitochondrion, nucleus | 65.45 | 62.65 |
| Zm00001d041767_P002 | Maize | nucleus | 67.48 | 62.64 |
| Bra020543.1-P | Field mustard | cytosol, nucleus, plastid | 64.63 | 62.6 |
| Os01t0887700-01 | Rice | nucleus | 69.11 | 62.5 |
| Os04t0444900-01 | Rice | nucleus | 63.82 | 61.33 |
| Os02t0564100-01 | Rice | nucleus | 65.85 | 60.67 |
| Bra009121.1-P | Field mustard | nucleus | 58.54 | 60.0 |
| Bra034860.1-P | Field mustard | nucleus | 60.16 | 59.92 |
| KXG26388 | Sorghum | cytosol | 60.57 | 59.6 |
| Bra002307.1-P | Field mustard | nucleus | 68.29 | 59.57 |
| Zm00001d016861_P003 | Maize | cytosol, nucleus, plastid | 68.29 | 59.57 |
| Bra034169.1-P | Field mustard | nucleus | 60.16 | 59.2 |
| Zm00001d050816_P002 | Maize | cytosol, endoplasmic reticulum, nucleus | 67.48 | 57.84 |
| GSMUA_AchrUn_... | Banana | plastid | 29.67 | 57.03 |
| Zm00001d012196_P005 | Maize | nucleus | 64.23 | 55.05 |
| Bra001393.1-P | Field mustard | nucleus | 55.28 | 54.4 |
| Zm00001d023962_P001 | Maize | nucleus | 67.07 | 53.57 |
| Zm00001d025504_P001 | Maize | nucleus | 49.59 | 49.19 |
| HORVU3Hr1G090540.1 | Barley | nucleus | 69.92 | 49.14 |
| GSMUA_Achr10P... | Banana | nucleus | 44.72 | 42.31 |
| Bra005861.1-P | Field mustard | mitochondrion | 28.46 | 38.46 |
| TraesCS2A01G312700.1 | Wheat | nucleus | 43.09 | 37.46 |
| TraesCS2D01G311200.1 | Wheat | nucleus | 42.28 | 36.75 |
| TraesCS2B01G329700.1 | Wheat | nucleus | 42.28 | 36.75 |
| Zm00001d025491_P002 | Maize | nucleus | 51.63 | 34.89 |
| TraesCSU01G246200.1 | Wheat | cytosol, nucleus, plastid | 28.86 | 32.42 |
| TraesCSU01G252500.1 | Wheat | cytosol, nucleus, plastid | 28.86 | 32.42 |
| HORVU2Hr1G077670.3 | Barley | nucleus | 43.5 | 30.14 |
Protein Annotations
| MapMan:15.5.8 | Gene3D:3.30.40.10 | InterPro:Alfin | EnsemblPlantsGene:Bra024817 | EnsemblPlants:Bra024817.1 | EnsemblPlants:Bra024817.1-P |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0042393 | GO:GO:0046872 | InterPro:IPR013083 |
| InterPro:IPR019787 | UniProt:M4E7R1 | PFAM:PF00628 | PFAM:PF12165 | ScanProsite:PS01359 | PFscan:PS50016 |
| PANTHER:PTHR12321 | PANTHER:PTHR12321:SF60 | SMART:SM00249 | SUPFAM:SSF57903 | UniParc:UPI000253F8CC | InterPro:Zinc_finger_PHD-type_CS |
| InterPro:Znf_FYVE_PHD | InterPro:Znf_PHD | InterPro:Znf_PHD-finger | InterPro:Znf_RING/FYVE/PHD | SEG:seg | : |
Description
AT1G14510 (E=6e-095) AL7 | AL7 (ALFIN-LIKE 7); DNA binding / methylated histone residue binding
Coordinates
chrA06:-:23605901..23607602
Molecular Weight (calculated)
27778.7 Da
IEP (calculated)
5.078
GRAVY (calculated)
-0.587
Length
246 amino acids
Sequence
(BLAST)
(BLAST)
001: MEGSNIITQH TPRTVEEVFS DFRGRRAGLI KALTIDMVKF YQTCDPEKEN FCLYGLPNET WEVNLPAEEV PPELPEPALG INFARDGMQE KDWVSLVAVH
101: SDSWLLSVAF YFGARFGFVK NERKRLFQMI NDLPTIFEVV TGNAKQSKDH SGTNNNNSIS KPSGLKVSKM MSSPPPKEED ESEDEEEEQG AVCGACGDNY
201: GTDEFWICCD ACEKWFHGRC VKITPAKAEH IKHYKCPSCT NKRARP
101: SDSWLLSVAF YFGARFGFVK NERKRLFQMI NDLPTIFEVV TGNAKQSKDH SGTNNNNSIS KPSGLKVSKM MSSPPPKEED ESEDEEEEQG AVCGACGDNY
201: GTDEFWICCD ACEKWFHGRC VKITPAKAEH IKHYKCPSCT NKRARP
001: MEGITHPIPR TVEEVFSDFR GRRAGLIKAL TNDMVKFYQT CDPEKENLCL YGLPNETWEV NLPVEEVPPE LPEPALGINF ARDGMQEKDW VSLVAVHSDS
101: WLLSVAFYFG ARFGFGKNER KRLFQMINEL PTIFEVVSGN AKQSKDLSVN NNNSKSKPSG VKVAKMSSPP PKEEEEEEDE SEDESEDDEQ GAVCGACGDN
201: YGTDEFWICC DACEKWFHGK CVKITPAKAE HIKHYKCPTC SNKRARP
101: WLLSVAFYFG ARFGFGKNER KRLFQMINEL PTIFEVVSGN AKQSKDLSVN NNNSKSKPSG VKVAKMSSPP PKEEEEEEDE SEDESEDDEQ GAVCGACGDN
201: YGTDEFWICC DACEKWFHGK CVKITPAKAE HIKHYKCPTC SNKRARP
Arabidopsis Description
AL6AL6 [Source:UniProtKB/TrEMBL;Acc:A0A178VQJ7]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.