Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G02470.1 | KXG30618 | AT4G30860.1 | 21798944 |
| AT2G02470.1 | OQU80550 | AT4G30860.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d016861_P003 | Maize | cytosol, nucleus, plastid | 96.48 | 87.59 |
| Os02t0564100-01 | Rice | nucleus | 88.67 | 85.02 |
| Zm00001d050816_P002 | Maize | cytosol, endoplasmic reticulum, nucleus | 95.31 | 85.02 |
| CDY17594 | Canola | cytosol | 37.11 | 80.51 |
| EES08261 | Sorghum | nucleus | 75.0 | 75.59 |
| KXG26388 | Sorghum | cytosol | 72.27 | 74.0 |
| Solyc01g102750.2.1 | Tomato | nucleus | 69.53 | 71.49 |
| Solyc01g102760.2.1 | Tomato | nucleus | 69.14 | 71.37 |
| PGSC0003DMT400047018 | Potato | nucleus | 69.14 | 71.37 |
| EES18243 | Sorghum | nucleus | 71.09 | 70.82 |
| VIT_12s0035g01980.t01 | Wine grape | nucleus | 69.14 | 69.96 |
| OQU78932 | Sorghum | nucleus | 70.7 | 69.88 |
| KRH01887 | Soybean | nucleus | 68.36 | 69.44 |
| KRH51269 | Soybean | nucleus | 67.97 | 69.32 |
| CDY04130 | Canola | cytosol, nucleus, plastid | 66.02 | 69.26 |
| CDY17436 | Canola | cytosol, nucleus, plastid | 66.02 | 69.26 |
| Bra017415.1-P | Field mustard | cytosol, nucleus, plastid | 66.02 | 69.26 |
| KXG33847 | Sorghum | nucleus | 69.14 | 69.14 |
| Bra024817.1-P | Field mustard | nucleus | 65.62 | 68.29 |
| CDY03049 | Canola | cytosol | 64.84 | 67.76 |
| AT2G02470.1 | Thale cress | cytosol, nucleus, plastid | 67.19 | 67.19 |
| AT1G14510.1 | Thale cress | nucleus | 64.84 | 65.87 |
| CDX84026 | Canola | nucleus | 64.06 | 65.6 |
| CDY53545 | Canola | cytosol | 62.11 | 65.43 |
| CDX81645 | Canola | cytosol | 62.11 | 65.43 |
| Bra016698.1-P | Field mustard | cytosol | 63.28 | 64.8 |
| CDX96851 | Canola | cytosol | 63.28 | 64.8 |
| Bra026825.1-P | Field mustard | nucleus | 61.72 | 64.75 |
| CDY65375 | Canola | nucleus | 60.94 | 63.93 |
| Bra026210.1-P | Field mustard | nucleus | 62.11 | 63.6 |
| CDY45267 | Canola | nucleus | 50.0 | 62.75 |
| CDY17593 | Canola | cytosol | 27.73 | 60.17 |
| EER97523 | Sorghum | nucleus | 62.11 | 59.11 |
| EES00286 | Sorghum | nucleus | 54.69 | 57.85 |
| OQU88744 | Sorghum | cytosol | 53.12 | 56.2 |
| OQU77499 | Sorghum | nucleus | 55.47 | 56.13 |
| EER90633 | Sorghum | nucleus | 54.3 | 55.6 |
| OQU88643 | Sorghum | extracellular, golgi, mitochondrion | 23.44 | 49.59 |
| GSMUA_Achr10P... | Banana | nucleus | 47.66 | 46.92 |
| OQU77873 | Sorghum | cytosol | 34.77 | 35.74 |
| OQU77872 | Sorghum | cytosol, mitochondrion, nucleus, plastid | 28.52 | 32.59 |
| OQU77871 | Sorghum | cytosol | 13.67 | 30.7 |
| KXG21847 | Sorghum | cytosol, plastid | 34.77 | 30.69 |
| KXG24231 | Sorghum | cytosol, mitochondrion, nucleus, plastid | 28.12 | 26.67 |
Protein Annotations
| MapMan:15.5.8 | Gene3D:3.30.40.10 | EntrezGene:8072592 | InterPro:Alfin | UniProt:C5XUZ7 | EnsemblPlants:EES05274 |
| ProteinID:EES05274 | ProteinID:EES05274.1 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0006139 |
| GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0042393 |
| GO:GO:0046872 | InterPro:IPR013083 | InterPro:IPR019787 | PFAM:PF00628 | PFAM:PF12165 | ScanProsite:PS01359 |
| PFscan:PS50016 | PANTHER:PTHR12321 | PANTHER:PTHR12321:SF98 | SMART:SM00249 | EnsemblPlantsGene:SORBI_3004G182900 | SUPFAM:SSF57903 |
| unigene:Sbi.15244 | UniParc:UPI0001A85853 | RefSeq:XP_002452298.1 | InterPro:Zinc_finger_PHD-type_CS | InterPro:Znf_FYVE_PHD | InterPro:Znf_PHD |
| InterPro:Znf_PHD-finger | InterPro:Znf_RING/FYVE/PHD | SEG:seg | : | : | : |
Description
hypothetical protein
Coordinates
chr4:+:53664452..53668240
Molecular Weight (calculated)
28610.4 Da
IEP (calculated)
6.310
GRAVY (calculated)
-0.704
Length
256 amino acids
Sequence
(BLAST)
(BLAST)
001: MDGDGGGAAA VHHHTRSPED VFRDFRARRA GIVKALTTDV EKFYQQCDPE KENLCLYGLP NETWEVTLPA EEVPPELPEP ALGINFARDG MIEKDWLSLV
101: AVHSDAWLLS VAFYFGARFG FDKEARRRLF TMINNLPTVY EVVTGVAKKQ SKAPNGSSKS SKSNSKPSKQ TNSNSKPAKP THPKEEEDSG HEDAEEEDQA
201: YLCGSCGESY ANGEFWICCD VCEKWFHGKC VRITPAKAEH IKQYKCPSCS TKRSRE
101: AVHSDAWLLS VAFYFGARFG FDKEARRRLF TMINNLPTVY EVVTGVAKKQ SKAPNGSSKS SKSNSKPSKQ TNSNSKPAKP THPKEEEDSG HEDAEEEDQA
201: YLCGSCGESY ANGEFWICCD VCEKWFHGKC VRITPAKAEH IKQYKCPSCS TKRSRE
001: MEGGAALYNP RTVEEVFKDF KGRRTAIVKA LTTDVQEFYQ QCDPEKENLC LYGLPNEEWE VNLPAEEVPP ELPEPALGIN FARDGLSEKE WLSLVAIHSD
101: AWLLSVSFYF GSRFSFHKEE RKRLFNMIND VPTIFEVVTG MAKAKDKSSA ANQNGNKSKS NSKVRTSEGK SSKTKQPKEE DEEIDEDDED DHGETLCGAC
201: GDSDGADEFW ICCDLCEKWF HGKCVKITPA RAEHIKQYKC PSCSNKRARA
101: AWLLSVSFYF GSRFSFHKEE RKRLFNMIND VPTIFEVVTG MAKAKDKSSA ANQNGNKSKS NSKVRTSEGK SSKTKQPKEE DEEIDEDDED DHGETLCGAC
201: GDSDGADEFW ICCDLCEKWF HGKCVKITPA RAEHIKQYKC PSCSNKRARA
Arabidopsis Description
AL3AL3 [Source:UniProtKB/TrEMBL;Acc:A0A178VCG6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.