Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- plastid 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Zm00001d032143_P001 | |
| Zm00001d051057_P002 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G02470.1 | Zm00001d032143_P001 | AT4G30860.1 | 21798944 |
| AT2G02470.1 | Zm00001d051057_P002 | AT4G30860.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EES05274 | Sorghum | nucleus | 87.59 | 96.48 |
| Zm00001d049007_P001 | Maize | cytosol | 37.94 | 90.68 |
| Zm00001d050816_P002 | Maize | cytosol, endoplasmic reticulum, nucleus | 86.52 | 85.02 |
| Os02t0564100-01 | Rice | nucleus | 78.01 | 82.4 |
| CDY17594 | Canola | cytosol | 33.69 | 80.51 |
| Zm00001d010241_P002 | Maize | cytosol | 44.68 | 77.78 |
| Zm00001d038208_P001 | Maize | nucleus | 64.18 | 70.7 |
| Solyc01g102750.2.1 | Tomato | nucleus | 62.06 | 70.28 |
| Solyc01g102760.2.1 | Tomato | nucleus | 61.7 | 70.16 |
| PGSC0003DMT400047018 | Potato | nucleus | 61.7 | 70.16 |
| VIT_12s0035g01980.t01 | Wine grape | nucleus | 62.06 | 69.17 |
| KRH01887 | Soybean | nucleus | 61.7 | 69.05 |
| KRH51269 | Soybean | nucleus | 61.35 | 68.92 |
| CDY04130 | Canola | cytosol, nucleus, plastid | 59.57 | 68.85 |
| CDY17436 | Canola | cytosol, nucleus, plastid | 59.57 | 68.85 |
| Bra017415.1-P | Field mustard | cytosol, nucleus, plastid | 59.57 | 68.85 |
| Bra024817.1-P | Field mustard | nucleus | 59.57 | 68.29 |
| Zm00001d042582_P001 | Maize | cytosol, mitochondrion, nucleus | 62.06 | 68.09 |
| CDY03049 | Canola | cytosol | 58.87 | 67.76 |
| AT2G02470.1 | Thale cress | cytosol, nucleus, plastid | 60.99 | 67.19 |
| Zm00001d041767_P002 | Maize | nucleus | 62.41 | 66.42 |
| CDX81645 | Canola | cytosol | 56.74 | 65.84 |
| CDY53545 | Canola | cytosol | 56.74 | 65.84 |
| AT1G14510.1 | Thale cress | nucleus | 58.51 | 65.48 |
| Bra026825.1-P | Field mustard | nucleus | 56.38 | 65.16 |
| CDX84026 | Canola | nucleus | 57.45 | 64.8 |
| Bra016698.1-P | Field mustard | cytosol | 56.74 | 64.0 |
| CDX96851 | Canola | cytosol | 56.74 | 64.0 |
| CDY65375 | Canola | nucleus | 54.96 | 63.52 |
| Bra026210.1-P | Field mustard | nucleus | 55.67 | 62.8 |
| CDY45267 | Canola | nucleus | 45.04 | 62.25 |
| Zm00001d023962_P001 | Maize | nucleus | 65.96 | 60.39 |
| Zm00001d044178_P001 | Maize | cytosol | 19.86 | 60.22 |
| CDY17593 | Canola | cytosol | 25.18 | 60.17 |
| Zm00001d049006_P001 | Maize | plastid | 27.66 | 59.54 |
| Zm00001d012196_P005 | Maize | nucleus | 59.93 | 58.88 |
| Zm00001d009466_P001 | Maize | cytosol | 20.21 | 58.76 |
| Zm00001d025504_P001 | Maize | nucleus | 51.06 | 58.06 |
| Zm00001d005185_P001 | Maize | nucleus | 48.58 | 56.85 |
| Zm00001d028496_P001 | Maize | cytosol | 20.21 | 56.44 |
| Zm00001d010834_P001 | Maize | nucleus | 50.35 | 56.13 |
| Zm00001d034627_P002 | Maize | nucleus | 49.29 | 55.6 |
| Zm00001d036294_P001 | Maize | plastid | 24.82 | 54.26 |
| Zm00001d037537_P001 | Maize | nucleus | 48.23 | 52.71 |
| Zm00001d022110_P002 | Maize | nucleus | 55.32 | 49.52 |
| GSMUA_Achr10P... | Banana | nucleus | 42.91 | 46.54 |
| Zm00001d025491_P002 | Maize | nucleus | 53.55 | 41.48 |
| TraesCSU01G252500.1 | Wheat | cytosol, nucleus, plastid | 25.89 | 33.33 |
| TraesCSU01G246200.1 | Wheat | cytosol, nucleus, plastid | 25.89 | 33.33 |
Protein Annotations
| MapMan:15.5.8 | Gene3D:3.30.40.10 | UniProt:A0A1D6HAX1 | ProteinID:AQK71856.1 | InterPro:Alfin | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0042393 | GO:GO:0046872 | InterPro:IPR013083 | InterPro:IPR019787 |
| PFAM:PF00628 | PFAM:PF12165 | ScanProsite:PS01359 | PFscan:PS50016 | PANTHER:PTHR12321 | PANTHER:PTHR12321:SF98 |
| SMART:SM00249 | SUPFAM:SSF57903 | UniParc:UPI000843C22F | InterPro:Zinc_finger_PHD-type_CS | EnsemblPlantsGene:Zm00001d016861 | EnsemblPlants:Zm00001d016861_P003 |
| EnsemblPlants:Zm00001d016861_T003 | InterPro:Znf_FYVE_PHD | InterPro:Znf_PHD | InterPro:Znf_PHD-finger | InterPro:Znf_RING/FYVE/PHD | SEG:seg |
Description
Alfin-like-transcription factor 2PHD finger protein ALFIN-LIKE 6
Coordinates
chr5:+:178509733..178513664
Molecular Weight (calculated)
31750.5 Da
IEP (calculated)
7.672
GRAVY (calculated)
-0.621
Length
282 amino acids
Sequence
(BLAST)
(BLAST)
001: MDGDGGGAGA LHHHTRSPED VFRDFRARRA GIVKALTTDV EKFYQQCDPE KENLCLYGLP NETWEVTLPA EEVPPELPEP ALGINFARDG MVEKDWLSLV
101: AVHSDAWLLS VAFYFGARFG FDKDARCTAK AMYLKRAKQP IFGIIHWWHL DFRRRLFTMI NNLPTVYEVV TGVAKKQSKA PNGSSKSSKP NSKPSKLTNS
201: NSKPAKPAHP KEEEDSGRED AEEDQAYLCG SCGESYANGE FWICCDVCEK WFHGKCVRIT PAKAEHIKQY KCPSCSTKRS RE
101: AVHSDAWLLS VAFYFGARFG FDKDARCTAK AMYLKRAKQP IFGIIHWWHL DFRRRLFTMI NNLPTVYEVV TGVAKKQSKA PNGSSKSSKP NSKPSKLTNS
201: NSKPAKPAHP KEEEDSGRED AEEDQAYLCG SCGESYANGE FWICCDVCEK WFHGKCVRIT PAKAEHIKQY KCPSCSTKRS RE
001: MEGIQHPIPR TVEEVFSDFR GRRAGLIKAL STDVQKFYHQ CDPEKENLCL YGLPNETWEV NLPVEEVPPE LPEPALGINF ARDGMQEKDW ISLVAVHSDS
101: WLISVAFYFG ARFGFGKNER KRLFQMINDL PTIFEVVTGN AKQSKDQSAN HNSSRSKSSG GKPRHSESHT KASKMSPPPR KEDESGDEDE DDEQGAVCGA
201: CGDNYGGDEF WICCDACEKW FHGKCVKITP AKAEHIKHYK CPSCTTSKKM KA
101: WLISVAFYFG ARFGFGKNER KRLFQMINDL PTIFEVVTGN AKQSKDQSAN HNSSRSKSSG GKPRHSESHT KASKMSPPPR KEDESGDEDE DDEQGAVCGA
201: CGDNYGGDEF WICCDACEKW FHGKCVKITP AKAEHIKHYK CPSCTTSKKM KA
Arabidopsis Description
AL7AtAL7 [Source:UniProtKB/TrEMBL;Acc:A0A178WNG6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.