Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| VIT_11s0037g00880.t01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G02470.1 | VIT_11s0037g00880.t01 | AT4G30860.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY17594 | Canola | cytosol | 40.71 | 87.29 |
| PGSC0003DMT400047018 | Potato | nucleus | 84.19 | 85.89 |
| Solyc01g102760.2.1 | Tomato | nucleus | 83.79 | 85.48 |
| KRH51269 | Soybean | nucleus | 84.19 | 84.86 |
| Solyc01g102750.2.1 | Tomato | nucleus | 83.4 | 84.74 |
| KRH01887 | Soybean | nucleus | 84.19 | 84.52 |
| Bra017415.1-P | Field mustard | cytosol, nucleus, plastid | 79.45 | 82.38 |
| CDY17436 | Canola | cytosol, nucleus, plastid | 79.45 | 82.38 |
| CDY04130 | Canola | cytosol, nucleus, plastid | 79.45 | 82.38 |
| AT2G02470.1 | Thale cress | cytosol, nucleus, plastid | 82.21 | 81.25 |
| GSMUA_AchrUn_... | Banana | cytosol | 38.34 | 80.17 |
| AT1G14510.1 | Thale cress | nucleus | 79.45 | 79.76 |
| Bra024817.1-P | Field mustard | nucleus | 77.08 | 79.27 |
| CDX84026 | Canola | nucleus | 77.47 | 78.4 |
| CDY03049 | Canola | cytosol | 75.89 | 78.37 |
| CDX96851 | Canola | cytosol | 77.08 | 78.0 |
| Bra016698.1-P | Field mustard | cytosol | 77.08 | 78.0 |
| Bra026825.1-P | Field mustard | nucleus | 74.31 | 77.05 |
| CDY53545 | Canola | cytosol | 73.91 | 76.95 |
| CDX81645 | Canola | cytosol | 73.91 | 76.95 |
| VIT_11s0016g01500.t01 | Wine grape | nucleus | 74.7 | 75.0 |
| CDY17593 | Canola | cytosol | 34.78 | 74.58 |
| GSMUA_Achr10P... | Banana | nucleus | 74.7 | 74.41 |
| GSMUA_Achr3P16750_001 | Banana | nucleus | 73.52 | 73.52 |
| Zm00001d010241_P002 | Maize | cytosol | 47.04 | 73.46 |
| Os11t0244800-01 | Rice | nucleus | 73.52 | 73.23 |
| EES08261 | Sorghum | nucleus | 73.52 | 73.23 |
| TraesCS4B01G088200.1 | Wheat | nucleus | 73.12 | 72.83 |
| VIT_09s0002g01600.t01 | Wine grape | nucleus | 75.1 | 72.8 |
| GSMUA_Achr6P28820_001 | Banana | nucleus | 72.73 | 72.73 |
| GSMUA_Achr11P... | Banana | nucleus | 72.33 | 72.62 |
| TraesCS4A01G227900.1 | Wheat | peroxisome | 72.73 | 72.44 |
| TraesCS4D01G085300.1 | Wheat | peroxisome | 72.73 | 72.44 |
| VIT_04s0008g01670.t01 | Wine grape | nucleus | 75.49 | 72.35 |
| GSMUA_Achr2P05660_001 | Banana | nucleus | 72.33 | 72.33 |
| GSMUA_Achr7P02940_001 | Banana | nucleus | 71.94 | 71.94 |
| GSMUA_Achr8P32300_001 | Banana | nucleus | 72.73 | 71.88 |
| HORVU4Hr1G015060.3 | Barley | nucleus | 71.94 | 71.65 |
| EES05274 | Sorghum | nucleus | 69.96 | 69.14 |
| EES18243 | Sorghum | nucleus | 69.96 | 68.87 |
| Zm00001d038208_P001 | Maize | nucleus | 69.57 | 68.75 |
| Os05t0419100-01 | Rice | nucleus | 69.57 | 68.22 |
| OQU78932 | Sorghum | nucleus | 69.17 | 67.57 |
| HORVU1Hr1G064250.4 | Barley | mitochondrion, nucleus, peroxisome | 70.36 | 67.42 |
| KXG33847 | Sorghum | nucleus | 67.98 | 67.19 |
| VIT_08s0105g00360.t01 | Wine grape | nucleus | 64.43 | 67.08 |
| TraesCS1D01G262200.1 | Wheat | peroxisome | 69.17 | 66.79 |
| TraesCS1A01G262200.1 | Wheat | peroxisome | 57.71 | 66.67 |
| TraesCS1B01G272800.3 | Wheat | peroxisome | 69.17 | 66.54 |
| GSMUA_AchrUn_... | Banana | plastid | 33.6 | 66.41 |
| TraesCS3A01G403600.1 | Wheat | cytosol | 68.77 | 66.16 |
| TraesCS3B01G437100.1 | Wheat | cytosol | 68.77 | 66.16 |
| TraesCS3D01G398800.2 | Wheat | cytosol | 68.77 | 66.16 |
| Zm00001d042582_P001 | Maize | cytosol, mitochondrion, nucleus | 66.8 | 65.76 |
| Os02t0564100-01 | Rice | nucleus | 69.17 | 65.54 |
| Zm00001d041767_P002 | Maize | nucleus | 67.59 | 64.53 |
| Os04t0444900-01 | Rice | nucleus | 65.22 | 64.45 |
| KXG26388 | Sorghum | cytosol | 63.64 | 64.4 |
| Os01t0887700-01 | Rice | nucleus | 68.77 | 63.97 |
| VIT_13s0067g01000.t01 | Wine grape | nucleus | 59.29 | 62.24 |
| Zm00001d016861_P003 | Maize | cytosol, nucleus, plastid | 69.17 | 62.06 |
| Zm00001d050816_P002 | Maize | cytosol, endoplasmic reticulum, nucleus | 69.57 | 61.32 |
| Zm00001d012196_P005 | Maize | nucleus | 66.8 | 58.88 |
| VIT_11s0016g01630.t01 | Wine grape | plastid | 22.53 | 56.44 |
| Zm00001d023962_P001 | Maize | nucleus | 68.38 | 56.17 |
| Zm00001d025504_P001 | Maize | nucleus | 50.99 | 52.02 |
| HORVU3Hr1G090540.1 | Barley | nucleus | 68.77 | 49.71 |
| GSMUA_Achr10P... | Banana | nucleus | 45.85 | 44.62 |
| TraesCS2A01G312700.1 | Wheat | nucleus | 46.25 | 41.34 |
| TraesCS2D01G311200.1 | Wheat | nucleus | 45.06 | 40.28 |
| TraesCS2B01G329700.1 | Wheat | nucleus | 45.06 | 40.28 |
| Zm00001d025491_P002 | Maize | nucleus | 54.15 | 37.64 |
| TraesCSU01G252500.1 | Wheat | cytosol, nucleus, plastid | 28.46 | 32.88 |
| TraesCSU01G246200.1 | Wheat | cytosol, nucleus, plastid | 28.46 | 32.88 |
| HORVU2Hr1G077670.3 | Barley | nucleus | 45.06 | 32.11 |
Protein Annotations
| EntrezGene:100259036 | wikigene:100259036 | MapMan:15.5.8 | Gene3D:3.30.40.10 | InterPro:Alfin | ProteinID:CBI29621 |
| ProteinID:CBI29621.3 | UniProt:D7TGJ9 | EMBL:FN595990 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0042393 | GO:GO:0046872 | InterPro:IPR013083 |
| InterPro:IPR019787 | EntrezGene:LOC100259036 | wikigene:LOC100259036 | PFAM:PF00628 | PFAM:PF12165 | ScanProsite:PS01359 |
| PFscan:PS50016 | PANTHER:PTHR12321 | PANTHER:PTHR12321:SF60 | SMART:SM00249 | SUPFAM:SSF57903 | TIGR:TC63919 |
| UniParc:UPI00015CB53A | ArrayExpress:VIT_12s0035g01980 | EnsemblPlantsGene:VIT_12s0035g01980 | EnsemblPlants:VIT_12s0035g01980.t01 | unigene:Vvi.4732 | RefSeq:XP_002271574 |
| RefSeq:XP_002271574.1 | InterPro:Zinc_finger_PHD-type_CS | InterPro:Znf_FYVE_PHD | InterPro:Znf_PHD | InterPro:Znf_PHD-finger | InterPro:Znf_RING/FYVE/PHD |
| SEG:seg | : | : | : | : | : |
Description
No Description!
Coordinates
chr12:-:22289134..22296029
Molecular Weight (calculated)
28507.6 Da
IEP (calculated)
4.992
GRAVY (calculated)
-0.687
Length
253 amino acids
Sequence
(BLAST)
(BLAST)
001: MEGLPPHPVP RTVEEVFSDY RGRRAGLIKA LTTEVEKFYQ QCDPEKENLC LYGLPNETWE VNLPVEEVPP ELPEPALGIN FARDGMQEKD WLSLVAVHSD
101: SWLLAVAFYF GARFGFGKSE RKRLFQMINE LPTIFEVVTG VKQQRDMSGN HNNSNKSKSS GKMSRQPEPQ TKGVKVSPPS KEEDESGDED AEDDEQGAIC
201: GACGDNYAND EFWICCDVCE KWFHGKCVKI TPAKAEHIKQ YKCPGCSNKR ARV
101: SWLLAVAFYF GARFGFGKSE RKRLFQMINE LPTIFEVVTG VKQQRDMSGN HNNSNKSKSS GKMSRQPEPQ TKGVKVSPPS KEEDESGDED AEDDEQGAIC
201: GACGDNYAND EFWICCDVCE KWFHGKCVKI TPAKAEHIKQ YKCPGCSNKR ARV
001: MEGITHPIPR TVEEVFSDFR GRRAGLIKAL TNDMVKFYQT CDPEKENLCL YGLPNETWEV NLPVEEVPPE LPEPALGINF ARDGMQEKDW VSLVAVHSDS
101: WLLSVAFYFG ARFGFGKNER KRLFQMINEL PTIFEVVSGN AKQSKDLSVN NNNSKSKPSG VKSRQSESLS KVAKMSSPPP KEEEEEEDES EDESEDDEQG
201: AVCGACGDNY GTDEFWICCD ACEKWFHGKC VKITPAKAEH IKHYKCPTCS NKRARP
101: WLLSVAFYFG ARFGFGKNER KRLFQMINEL PTIFEVVSGN AKQSKDLSVN NNNSKSKPSG VKSRQSESLS KVAKMSSPPP KEEEEEEDES EDESEDDEQG
201: AVCGACGDNY GTDEFWICCD ACEKWFHGKC VKITPAKAEH IKHYKCPTCS NKRARP
Arabidopsis Description
AL6AL6 [Source:UniProtKB/TrEMBL;Acc:A0A178VQJ7]
SUBAcon: [plastid,nucleus,cytosol]
SUBAcon: [plastid,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.