Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- peroxisome 2
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| PGSC0003DMT400028986 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G02470.1 | PGSC0003DMT400028986 | AT4G30860.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc01g102750.2.1 | Tomato | nucleus | 98.79 | 98.39 |
| CDY17594 | Canola | cytosol | 41.13 | 86.44 |
| VIT_12s0035g01980.t01 | Wine grape | nucleus | 85.89 | 84.19 |
| KRH01887 | Soybean | nucleus | 84.68 | 83.33 |
| KRH51269 | Soybean | nucleus | 84.27 | 83.27 |
| AT1G14510.1 | Thale cress | nucleus | 79.84 | 78.57 |
| GSMUA_AchrUn_... | Banana | cytosol | 37.9 | 77.69 |
| Bra017415.1-P | Field mustard | cytosol, nucleus, plastid | 76.21 | 77.46 |
| CDY04130 | Canola | cytosol, nucleus, plastid | 76.21 | 77.46 |
| CDY17436 | Canola | cytosol, nucleus, plastid | 76.21 | 77.46 |
| Bra024817.1-P | Field mustard | nucleus | 75.81 | 76.42 |
| AT2G02470.1 | Thale cress | cytosol, nucleus, plastid | 78.63 | 76.17 |
| CDX84026 | Canola | nucleus | 76.61 | 76.0 |
| CDY03049 | Canola | cytosol | 75.0 | 75.92 |
| CDY53545 | Canola | cytosol | 73.79 | 75.31 |
| CDX96851 | Canola | cytosol | 75.81 | 75.2 |
| Bra016698.1-P | Field mustard | cytosol | 75.81 | 75.2 |
| EES08261 | Sorghum | nucleus | 76.61 | 74.8 |
| Bra026825.1-P | Field mustard | nucleus | 73.39 | 74.59 |
| CDX81645 | Canola | cytosol | 72.58 | 74.07 |
| Os11t0244800-01 | Rice | nucleus | 75.4 | 73.62 |
| GSMUA_Achr10P... | Banana | nucleus | 75.0 | 73.23 |
| PGSC0003DMT400054001 | Potato | nucleus | 72.58 | 72.87 |
| TraesCS4B01G088200.1 | Wheat | nucleus | 74.6 | 72.83 |
| TraesCS4D01G085300.1 | Wheat | peroxisome | 74.19 | 72.44 |
| TraesCS4A01G227900.1 | Wheat | peroxisome | 74.19 | 72.44 |
| HORVU4Hr1G015060.3 | Barley | nucleus | 73.79 | 72.05 |
| PGSC0003DMT400012523 | Potato | nucleus | 74.6 | 71.98 |
| GSMUA_Achr7P02940_001 | Banana | nucleus | 73.39 | 71.94 |
| GSMUA_Achr3P16750_001 | Banana | nucleus | 73.39 | 71.94 |
| GSMUA_Achr8P32300_001 | Banana | nucleus | 74.19 | 71.88 |
| Zm00001d010241_P002 | Maize | cytosol | 46.77 | 71.6 |
| GSMUA_Achr2P05660_001 | Banana | nucleus | 72.58 | 71.15 |
| GSMUA_Achr6P28820_001 | Banana | nucleus | 71.77 | 70.36 |
| GSMUA_Achr11P... | Banana | nucleus | 71.37 | 70.24 |
| CDY17593 | Canola | cytosol | 33.06 | 69.49 |
| Zm00001d038208_P001 | Maize | nucleus | 71.37 | 69.14 |
| EES05274 | Sorghum | nucleus | 71.37 | 69.14 |
| Os05t0419100-01 | Rice | nucleus | 71.77 | 68.99 |
| EES18243 | Sorghum | nucleus | 71.37 | 68.87 |
| TraesCS1A01G262200.1 | Wheat | peroxisome | 60.08 | 68.04 |
| OQU78932 | Sorghum | nucleus | 69.76 | 66.8 |
| HORVU1Hr1G064250.4 | Barley | mitochondrion, nucleus, peroxisome | 70.97 | 66.67 |
| TraesCS1D01G262200.1 | Wheat | peroxisome | 70.16 | 66.41 |
| PGSC0003DMT400059399 | Potato | nucleus | 64.52 | 66.39 |
| TraesCS1B01G272800.3 | Wheat | peroxisome | 70.16 | 66.16 |
| KXG33847 | Sorghum | nucleus | 68.15 | 66.02 |
| Os02t0564100-01 | Rice | nucleus | 70.97 | 65.92 |
| PGSC0003DMT400049364 | Potato | nucleus | 63.71 | 65.83 |
| GSMUA_AchrUn_... | Banana | plastid | 33.87 | 65.62 |
| TraesCS3D01G398800.2 | Wheat | cytosol | 69.35 | 65.4 |
| TraesCS3B01G437100.1 | Wheat | cytosol | 68.95 | 65.02 |
| TraesCS3A01G403600.1 | Wheat | cytosol | 68.95 | 65.02 |
| Zm00001d042582_P001 | Maize | cytosol, mitochondrion, nucleus | 66.94 | 64.59 |
| Zm00001d041767_P002 | Maize | nucleus | 68.95 | 64.53 |
| Os01t0887700-01 | Rice | nucleus | 70.16 | 63.97 |
| PGSC0003DMT400028638 | Potato | nucleus | 61.29 | 63.33 |
| Os04t0444900-01 | Rice | nucleus | 65.32 | 63.28 |
| KXG26388 | Sorghum | cytosol | 63.31 | 62.8 |
| Zm00001d016861_P003 | Maize | cytosol, nucleus, plastid | 70.16 | 61.7 |
| Zm00001d050816_P002 | Maize | cytosol, endoplasmic reticulum, nucleus | 71.37 | 61.67 |
| Zm00001d012196_P005 | Maize | nucleus | 67.34 | 58.19 |
| PGSC0003DMT400006365 | Potato | nucleus | 62.9 | 56.52 |
| Zm00001d023962_P001 | Maize | nucleus | 69.35 | 55.84 |
| Zm00001d025504_P001 | Maize | nucleus | 50.4 | 50.4 |
| HORVU3Hr1G090540.1 | Barley | nucleus | 68.95 | 48.86 |
| GSMUA_Achr10P... | Banana | nucleus | 45.16 | 43.08 |
| TraesCS2A01G312700.1 | Wheat | nucleus | 47.58 | 41.7 |
| TraesCS2D01G311200.1 | Wheat | nucleus | 46.77 | 40.99 |
| TraesCS2B01G329700.1 | Wheat | nucleus | 46.77 | 40.99 |
| Zm00001d025491_P002 | Maize | nucleus | 53.23 | 36.26 |
| TraesCSU01G252500.1 | Wheat | cytosol, nucleus, plastid | 28.63 | 32.42 |
| TraesCSU01G246200.1 | Wheat | cytosol, nucleus, plastid | 28.63 | 32.42 |
| HORVU2Hr1G077670.3 | Barley | nucleus | 46.37 | 32.39 |
Protein Annotations
| EntrezGene:102577447 | MapMan:15.5.8 | Gene3D:3.30.40.10 | ProteinID:AAY27262 | ProteinID:AAY27262.1 | InterPro:Alfin |
| EMBL:DQ010328 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0006139 | GO:GO:0006355 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0042393 | GO:GO:0046872 |
| InterPro:IPR013083 | InterPro:IPR019787 | UniProt:M1BK15 | PFAM:PF00628 | PFAM:PF12165 | EnsemblPlantsGene:PGSC0003DMG400018261 |
| PGSC:PGSC0003DMG400018261 | EnsemblPlants:PGSC0003DMT400047018 | ScanProsite:PS01359 | PFscan:PS50016 | PANTHER:PTHR12321 | PANTHER:PTHR12321:SF60 |
| SMART:SM00249 | SUPFAM:SSF57903 | UniParc:UPI000296DF25 | RefSeq:XP_006358476.1 | InterPro:Zinc_finger_PHD-type_CS | InterPro:Znf_FYVE_PHD |
| InterPro:Znf_PHD | InterPro:Znf_PHD-finger | InterPro:Znf_RING/FYVE/PHD | SEG:seg | : | : |
Description
Alfin-like transcription factor [Source:PGSC_GENE;Acc:PGSC0003DMG400018261]
Coordinates
chr1:+:79431652..79437487
Molecular Weight (calculated)
28023.9 Da
IEP (calculated)
4.896
GRAVY (calculated)
-0.650
Length
248 amino acids
Sequence
(BLAST)
(BLAST)
001: MENSVPRTVE EVFSDFKSRR AALIKALTTD VEKFYQQCDP EKENLCLYGL PNETWEVNLP VEEVPPELPE PALGINFARD GMQEKDWLSL VAVHSDSWLL
101: SVAFYFGARF GFGKSERKRL FQMINDLPTV FEVVTGAAKQ TRDPPHNNSN KSKSSGKPRQ PESQLKAVKV SPSKMENDSG EEEEEEEDEQ GATLCGACGD
201: NYATDEFWIC CDICERWFHG KCVKITPAKA EHIKQYKCPS CSSKRAKV
101: SVAFYFGARF GFGKSERKRL FQMINDLPTV FEVVTGAAKQ TRDPPHNNSN KSKSSGKPRQ PESQLKAVKV SPSKMENDSG EEEEEEEDEQ GATLCGACGD
201: NYATDEFWIC CDICERWFHG KCVKITPAKA EHIKQYKCPS CSSKRAKV
001: MEGIQHPIPR TVEEVFSDFR GRRAGLIKAL STDVQKFYHQ CDPEKENLCL YGLPNETWEV NLPVEEVPPE LPEPALGINF ARDGMQEKDW ISLVAVHSDS
101: WLISVAFYFG ARFGFGKNER KRLFQMINDL PTIFEVVTGN AKQSKDQSAN HNSSRSKSSG GKPRHSESHT KASKMSPPPR KEDESGDEDE DDEQGAVCGA
201: CGDNYGGDEF WICCDACEKW FHGKCVKITP AKAEHIKHYK CPSCTTSKKM KA
101: WLISVAFYFG ARFGFGKNER KRLFQMINDL PTIFEVVTGN AKQSKDQSAN HNSSRSKSSG GKPRHSESHT KASKMSPPPR KEDESGDEDE DDEQGAVCGA
201: CGDNYGGDEF WICCDACEKW FHGKCVKITP AKAEHIKHYK CPSCTTSKKM KA
Arabidopsis Description
AL7AtAL7 [Source:UniProtKB/TrEMBL;Acc:A0A178WNG6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.