Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc03g121930.2.1 | Tomato | nucleus | 89.86 | 89.86 |
| PGSC0003DMT400012523 | Potato | nucleus | 60.51 | 64.98 |
| PGSC0003DMT400047018 | Potato | nucleus | 56.52 | 62.9 |
| PGSC0003DMT400054001 | Potato | nucleus | 55.8 | 62.35 |
| PGSC0003DMT400049364 | Potato | nucleus | 50.72 | 58.33 |
| PGSC0003DMT400059399 | Potato | nucleus | 50.36 | 57.68 |
| PGSC0003DMT400028638 | Potato | nucleus | 48.19 | 55.42 |
| TraesCSU01G246200.1 | Wheat | cytosol, nucleus, plastid | 24.64 | 31.05 |
| TraesCSU01G252500.1 | Wheat | cytosol, nucleus, plastid | 24.64 | 31.05 |
Protein Annotations
| EntrezGene:102578725 | MapMan:15.5.8 | Gene3D:3.30.40.10 | InterPro:Alfin | ncoils:Coil | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0042393 | GO:GO:0046872 | InterPro:IPR013083 | InterPro:IPR019787 |
| UniProt:M0ZR78 | PFAM:PF00628 | PFAM:PF12165 | EnsemblPlantsGene:PGSC0003DMG400002485 | PGSC:PGSC0003DMG400002485 | EnsemblPlants:PGSC0003DMT400006365 |
| ScanProsite:PS01359 | PFscan:PS50016 | PANTHER:PTHR12321 | PANTHER:PTHR12321:SF65 | SMART:SM00249 | SUPFAM:SSF57903 |
| UniParc:UPI000294B6D4 | RefSeq:XP_006342952.1 | InterPro:Zinc_finger_PHD-type_CS | InterPro:Znf_FYVE_PHD | InterPro:Znf_PHD | InterPro:Znf_PHD-finger |
| InterPro:Znf_RING/FYVE/PHD | SEG:seg | : | : | : | : |
Description
PHD1 [Source:PGSC_GENE;Acc:PGSC0003DMG400002485]
Coordinates
chr3:-:61141094..61145589
Molecular Weight (calculated)
31570.8 Da
IEP (calculated)
4.441
GRAVY (calculated)
-0.854
Length
276 amino acids
Sequence
(BLAST)
(BLAST)
001: MEFGAKGQKK PKPIDVFKNV KGRYTGLIKA LTTDVEELYK QCDPEKENLS LYGLPNEQWE VNLPAEDSPP GLPEPVLGIN FAREGMEQKE WLSFVAYHSD
101: SWLLAIAFYV GARFGFGKAE RKKLFDMIND LPSIHEVVIG VPETQQKEKP TVPNQSKNKS KPNASKRASE PQGMLTKLQQ KYEDDDDEED DEEEEDKEDE
201: EEWGIEMDVE EEGGETLCGV CEGKYAKDEF WICCDHCETW FHGQCVKITA ATAEYIKQYK CPPCSSKRSR SHFTEY
101: SWLLAIAFYV GARFGFGKAE RKKLFDMIND LPSIHEVVIG VPETQQKEKP TVPNQSKNKS KPNASKRASE PQGMLTKLQQ KYEDDDDEED DEEEEDKEDE
201: EEWGIEMDVE EEGGETLCGV CEGKYAKDEF WICCDHCETW FHGQCVKITA ATAEYIKQYK CPPCSSKRSR SHFTEY
001: MEGGTAHYSP RTVEEVFRDF KGRRAGIIQA LTTDVEDFFQ QCDPEKQNLC LYGFPNEVWE VNLPAEEVPP ELPEPALGIN FARDGMQERN WLSLVAVHSD
101: AWLLSVSFYF GSRFGFDRAD RKRLFSMINE VPTVYEVVTG NAEKQTKEMP SSANQNGNRS KSNSKMRGLE SKSSKTIHAK DEEEGLELEE GEEEEDEDED
201: EHGETLCGAC GDNYASDEFW ICCDMCEKWF HGECVKITPA RAEHIKHYKC PTCSNKRARP
101: AWLLSVSFYF GSRFGFDRAD RKRLFSMINE VPTVYEVVTG NAEKQTKEMP SSANQNGNRS KSNSKMRGLE SKSSKTIHAK DEEEGLELEE GEEEEDEDED
201: EHGETLCGAC GDNYASDEFW ICCDMCEKWF HGECVKITPA RAEHIKHYKC PTCSNKRARP
Arabidopsis Description
AL5PHD finger protein ALFIN-LIKE 5 [Source:UniProtKB/Swiss-Prot;Acc:Q5XEM9]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.