Factsheet for PGSC0003DMT400049364

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400047018

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G11200.1	PGSC0003DMT400047018	AT1G14510.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc10g076690.1.1	Tomato	nucleus	99.17	99.17
PGSC0003DMT400059399	Potato	nucleus	86.25	85.89
KRH38049	Soybean	nucleus	81.67	82.35
VIT_08s0105g00360.t01	Wine grape	nucleus	83.33	82.3
KRH65724	Soybean	nucleus	80.83	81.17
KRH49390	Soybean	nucleus	80.0	80.33
PGSC0003DMT400028638	Potato	nucleus	80.0	80.0
KRH00242	Soybean	nucleus	79.58	79.92
GSMUA_Achr7P15530_001	Banana	nucleus	78.33	77.69
GSMUA_Achr10P...	Banana	nucleus	78.33	77.69
GSMUA_Achr2P18960_001	Banana	nucleus	75.42	74.79
AT5G05610.1	Thale cress	nucleus	75.0	74.69
AT3G11200.1	Thale cress	nucleus	75.42	73.58
CDX73886	Canola	nucleus	75.0	73.47
CDY00726	Canola	nucleus	74.17	72.65
Bra034860.1-P	Field mustard	nucleus	74.58	72.47
CDY08544	Canola	nucleus	74.58	72.47
Bra034169.1-P	Field mustard	nucleus	75.42	72.4
CDY01002	Canola	nucleus	75.0	72.0
CDY36305	Canola	cytosol	75.0	72.0
Os07t0233300-01	Rice	nucleus	72.5	71.31
KRH56367	Soybean	peroxisome	63.75	69.55
CDX70142	Canola	cytosol	69.17	69.17
Bra009121.1-P	Field mustard	nucleus	68.75	68.75
CDX98851	Canola	nucleus	68.75	68.75
KRH69940	Soybean	peroxisome	62.5	68.18
HORVU2Hr1G052960.2	Barley	cytosol	69.58	67.89
OQU88744	Sorghum	cytosol	68.33	67.77
Os03t0818300-01	Rice	nucleus	69.17	67.21
Bra001393.1-P	Field mustard	nucleus	70.0	67.2
Zm00001d005185_P001	Maize	nucleus	67.08	66.81
EES00286	Sorghum	nucleus	65.42	64.88
Zm00001d034627_P002	Maize	nucleus	67.5	64.8
EER90633	Sorghum	nucleus	67.08	64.4
TraesCS5D01G486400.2	Wheat	nucleus	66.67	63.74
PGSC0003DMT400047018	Potato	nucleus	65.83	63.71
TraesCS5B01G486600.1	Wheat	nucleus	66.25	63.35
OQU77499	Sorghum	nucleus	66.25	62.85
Zm00001d010834_P001	Maize	nucleus	66.25	62.85
PGSC0003DMT400012523	Potato	nucleus	66.67	62.26
PGSC0003DMT400054001	Potato	nucleus	63.75	61.94
TraesCS1B01G129400.1	Wheat	nucleus	64.17	59.92
TraesCS1D01G111700.1	Wheat	nucleus	64.17	59.92
TraesCS1A01G110200.1	Wheat	nucleus	63.75	59.53
Zm00001d037537_P001	Maize	nucleus	62.92	58.53
CDY36322	Canola	cytosol, plasma membrane, plastid	68.75	57.29
OQU88643	Sorghum	extracellular, golgi, mitochondrion	27.92	55.37
HORVU5Hr1G112420.6	Barley	nucleus	61.25	53.45
PGSC0003DMT400006365	Potato	nucleus	58.33	50.72
HORVU1Hr1G024210.1	Barley	nucleus	64.17	45.43
Os05t0163100-01	Rice	nucleus	40.83	36.84
TraesCSU01G246200.1	Wheat	cytosol, nucleus, plastid	32.92	36.07
TraesCSU01G252500.1	Wheat	cytosol, nucleus, plastid	32.92	36.07
HORVU5Hr1G059130.2	Barley	nucleus	21.25	34.0

Protein Annotations

EntrezGene:102583083	MapMan:15.5.8	Gene3D:3.30.40.10	InterPro:Alfin	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0042393	GO:GO:0046872	InterPro:IPR013083	InterPro:IPR019787	UniProt:M1BNL3
PFAM:PF00628	PFAM:PF12165	EnsemblPlantsGene:PGSC0003DMG400019178	PGSC:PGSC0003DMG400019178	EnsemblPlants:PGSC0003DMT400049364	ScanProsite:PS01359
PFscan:PS50016	PANTHER:PTHR12321	PANTHER:PTHR12321:SF96	SMART:SM00249	SUPFAM:SSF57903	UniParc:UPI0002950ADE
RefSeq:XP_006349453.1	InterPro:Zinc_finger_PHD-type_CS	InterPro:Znf_FYVE_PHD	InterPro:Znf_PHD	InterPro:Znf_PHD-finger	InterPro:Znf_RING/FYVE/PHD
SEG:seg	:	:	:	:	:

Description

Phd/F-box containing protein [Source:PGSC_GENE;Acc:PGSC0003DMG400019178]

Coordinates

chr10:-:50194878..50201746

Molecular Weight (calculated)

27091.7 Da

IEP (calculated)

5.981

GRAVY (calculated)

-0.659

Length

240 amino acids

Sequence
(BLAST)

001: MSSISSNPKT VEEIFKDYSS RRSGVVRALT HDVDEFYNLC DPEKENLCLY GHPNETWEVN LPAEEVPPEL PEPALGINFA RDGMNRRDWL SLVAVHSDCW
101: LLSVAFFFGT RLNQNERKRL FSMINELPTA FEIVAERKHV KEKPTADSGS KSRGSTKKSS DSQAKGTPKL ADESYPEEEE HGETLCGSCG GNYSADEFWI
201: GCDICERWFH GKCVKITPAK AESIKQYKCP SCSLKRSRVQ

Best Arabidopsis Sequence Match ( AT5G05610.1 )
(BLAST)

001: MAAESSNPRT VEEIFKDFSG RRSGFLRALS VDVDKFYSLC DPEMENLCLY GHPNGTWEVN LPAEEVPPEL PEPALGINFA RDGMQRKDWL SLVAVHSDCW
101: LLSVSSYFGA RLNRNERKRL FSLINDLPTL FEVVTGRKPI KDGKPSMDLG SKSRNGVKRS IEGQTKSTPK LMEESYEDED DEHGDTLCGS CGGNYTNDEF
201: WICCDVCERW YHGKCVKITP AKAESIKQYK CPSCCTKKGR Q

Arabidopsis Description

AL1AL1 [Source:UniProtKB/TrEMBL;Acc:A0A178UPZ2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.