Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc06g062850.2.1 | Tomato | nucleus | 96.89 | 96.89 |
| PGSC0003DMT400054001 | Potato | nucleus | 72.37 | 75.3 |
| PGSC0003DMT400047018 | Potato | nucleus | 71.98 | 74.6 |
| PGSC0003DMT400059399 | Potato | nucleus | 63.42 | 67.63 |
| PGSC0003DMT400049364 | Potato | nucleus | 62.26 | 66.67 |
| PGSC0003DMT400028638 | Potato | nucleus | 58.37 | 62.5 |
| PGSC0003DMT400006365 | Potato | nucleus | 64.98 | 60.51 |
| TraesCSU01G246200.1 | Wheat | cytosol, nucleus, plastid | 28.79 | 33.79 |
| TraesCSU01G252500.1 | Wheat | cytosol, nucleus, plastid | 28.79 | 33.79 |
Protein Annotations
| EntrezGene:102592153 | MapMan:15.5.8 | Gene3D:3.30.40.10 | InterPro:Alfin | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | GO:GO:0042393 | GO:GO:0046872 | InterPro:IPR013083 | InterPro:IPR019787 | UniProt:M1A1C6 |
| PFAM:PF00628 | PFAM:PF12165 | EnsemblPlantsGene:PGSC0003DMG400004887 | PGSC:PGSC0003DMG400004887 | EnsemblPlants:PGSC0003DMT400012523 | ScanProsite:PS01359 |
| PFscan:PS50016 | PANTHER:PTHR12321 | PANTHER:PTHR12321:SF98 | SMART:SM00249 | SUPFAM:SSF57903 | UniParc:UPI0002965095 |
| RefSeq:XP_006357396.1 | InterPro:Zinc_finger_PHD-type_CS | InterPro:Znf_FYVE_PHD | InterPro:Znf_PHD | InterPro:Znf_PHD-finger | InterPro:Znf_RING/FYVE/PHD |
| SEG:seg | : | : | : | : | : |
Description
PHD1 [Source:PGSC_GENE;Acc:PGSC0003DMG400004887]
Coordinates
chr6:+:48587503..48593397
Molecular Weight (calculated)
29096.1 Da
IEP (calculated)
4.792
GRAVY (calculated)
-0.726
Length
257 amino acids
Sequence
(BLAST)
(BLAST)
001: MDGGGGGEQF DSRTVEDVFG DFKRRRTALI KALTVDVEEF YQQCDPEKEN LCLYGLPNEQ WEVNLPAEEV PPELPEPALG INFARDGMED KDWLSLVAVH
101: SDSWLLSVAF YFGARFGFDK ASRKKLFNMI NELPTIYEVV TGAVKKQQKE KSSGHSGKKS KSNSKAQRAP DYQEKLAKLQ PKDEEEGLDE QEDEDEHGET
201: LCGACGENYA ADEFWICCDI CEKWFHGKCV KITPAKAEHI KQYKCPSCSH KRARVDI
101: SDSWLLSVAF YFGARFGFDK ASRKKLFNMI NELPTIYEVV TGAVKKQQKE KSSGHSGKKS KSNSKAQRAP DYQEKLAKLQ PKDEEEGLDE QEDEDEHGET
201: LCGACGENYA ADEFWICCDI CEKWFHGKCV KITPAKAEHI KQYKCPSCSH KRARVDI
001: MEGGAALYNP RTVEEVFKDF KGRRTAIVKA LTTDVQEFYQ QCDPEKENLC LYGLPNEEWE VNLPAEEVPP ELPEPALGIN FARDGLSEKE WLSLVAIHSD
101: AWLLSVSFYF GSRFSFHKEE RKRLFNMIND VPTIFEVVTG MAKAKDKSSA ANQNGNKSKS NSKVRTSEGK SSKTKQPKEE DEEIDEDDED DHGETLCGAC
201: GDSDGADEFW ICCDLCEKWF HGKCVKITPA RAEHIKQYKC PSCSNKRARA
101: AWLLSVSFYF GSRFSFHKEE RKRLFNMIND VPTIFEVVTG MAKAKDKSSA ANQNGNKSKS NSKVRTSEGK SSKTKQPKEE DEEIDEDDED DHGETLCGAC
201: GDSDGADEFW ICCDLCEKWF HGKCVKITPA RAEHIKQYKC PSCSNKRARA
Arabidopsis Description
AL3AL3 [Source:UniProtKB/TrEMBL;Acc:A0A178VCG6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.