Factsheet for PGSC0003DMT400054001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc07g041190.2.1	Tomato	nucleus	97.57	97.97
Zm00001d049007_P001	Maize	cytosol	38.87	81.36
VIT_09s0002g01600.t01	Wine grape	nucleus	85.43	80.84
VIT_04s0008g01670.t01	Wine grape	nucleus	85.43	79.92
KRH06119	Soybean	nucleus	79.35	77.47
KRH47546	Soybean	nucleus	78.54	76.68
KRH23260	Soybean	nucleus	75.3	75.61
KRH10063	Soybean	nucleus	75.3	75.0
PGSC0003DMT400047018	Potato	nucleus	72.87	72.58
PGSC0003DMT400012523	Potato	nucleus	75.3	72.37
PGSC0003DMT400059399	Potato	nucleus	62.35	63.9
PGSC0003DMT400049364	Potato	nucleus	61.94	63.75
PGSC0003DMT400028638	Potato	nucleus	58.7	60.42
Zm00001d049006_P001	Maize	plastid	30.36	57.25
PGSC0003DMT400006365	Potato	nucleus	62.35	55.8
TraesCSU01G246200.1	Wheat	cytosol, nucleus, plastid	28.34	31.96
TraesCSU01G252500.1	Wheat	cytosol, nucleus, plastid	28.34	31.96

Protein Annotations

EntrezGene:102597045	MapMan:15.5.8	Gene3D:3.30.40.10	InterPro:Alfin	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0042393	GO:GO:0046872	InterPro:IPR013083	InterPro:IPR019787	UniProt:M1BVQ7
PFAM:PF00628	PFAM:PF12165	EnsemblPlantsGene:PGSC0003DMG400020951	PGSC:PGSC0003DMG400020951	EnsemblPlants:PGSC0003DMT400054001	ScanProsite:PS01359
PFscan:PS50016	PANTHER:PTHR12321	PANTHER:PTHR12321:SF98	SMART:SM00249	SUPFAM:SSF57903	UniParc:UPI00029488DD
RefSeq:XP_006342348.1	InterPro:Zinc_finger_PHD-type_CS	InterPro:Znf_FYVE_PHD	InterPro:Znf_PHD	InterPro:Znf_PHD-finger	InterPro:Znf_RING/FYVE/PHD
SEG:seg	:	:	:	:	:

Description

DNA binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG400020951]

Coordinates

chr7:-:37506793..37511571

Molecular Weight (calculated)

28052.8 Da

IEP (calculated)

4.734

GRAVY (calculated)

-0.689

Length

247 amino acids

Sequence
(BLAST)

001: MEGGAAQYNP RTVEEVLKDF TGRRAGMIKA LTTDVEDFYQ QCDPEKENLC LYGYPSEQWE VNLPAEEVPP ELPEPALGIN FARDGMQEKE WLALVAVHSD
101: AWLLSVSFYF GARFGFDRAD RKRLFNMMND LPTIYEVVTG VAKKKVKDKS TVSNHSSNKS KSNSKAGKYS KPQVKDEDDG FDEEEEDEHG DTLCGACGEN
201: YASDEFWIFC DMCERWFHGN CVKITPAKAE HIKQYKCPSC SNKRILP

Best Arabidopsis Sequence Match ( AT5G20510.1 )
(BLAST)

001: MEGGTAHYSP RTVEEVFRDF KGRRAGIIQA LTTDVEDFFQ QCDPEKQNLC LYGFPNEVWE VNLPAEEVPP ELPEPALGIN FARDGMQERN WLSLVAVHSD
101: AWLLSVSFYF GSRFGFDRAD RKRLFSMINE VPTVYEVVTG NAEKQTKEMP SSANQNGNRS KSNSKMRGLE SKSSKTIHAK DEEEGLELEE GEEEEDEDED
201: EHGETLCGAC GDNYASDEFW ICCDMCEKWF HGECVKITPA RAEHIKHYKC PTCSNKRARP

Arabidopsis Description

AL5PHD finger protein ALFIN-LIKE 5 [Source:UniProtKB/Swiss-Prot;Acc:Q5XEM9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.