Factsheet for VIT_04s0008g01670.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_11s0016g01500.t01	Wine grape	nucleus	89.02	93.25
VIT_09s0002g01600.t01	Wine grape	nucleus	91.29	92.34
Zm00001d049007_P001	Maize	cytosol	39.02	87.29
Solyc05g032770.2.1	Tomato	nucleus	56.82	87.21
KRH06119	Soybean	nucleus	83.33	86.96
KRH47546	Soybean	nucleus	82.95	86.56
Solyc07g041190.2.1	Tomato	nucleus	79.92	85.77
PGSC0003DMT400054001	Potato	nucleus	79.92	85.43
KRH23260	Soybean	nucleus	78.03	83.74
VIT_11s0016g01630.t01	Wine grape	plastid	31.82	83.17
KRH10063	Soybean	nucleus	78.03	83.06
VIT_12s0035g01980.t01	Wine grape	nucleus	72.35	75.49
VIT_08s0105g00360.t01	Wine grape	nucleus	63.26	68.72
Zm00001d049006_P001	Maize	plastid	32.95	66.41
VIT_13s0067g01000.t01	Wine grape	nucleus	59.09	64.73
TraesCSU01G252500.1	Wheat	cytosol, nucleus, plastid	28.03	33.79
TraesCSU01G246200.1	Wheat	cytosol, nucleus, plastid	28.03	33.79

Protein Annotations

EntrezGene:100247536	wikigene:100247536	MapMan:15.5.8	Gene3D:3.30.40.10	InterPro:Alfin	ProteinID:CCB46598
ProteinID:CCB46598.1	UniProt:F6H3R5	EMBL:FN595231	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0042393	GO:GO:0046872	InterPro:IPR013083	InterPro:IPR019787	EntrezGene:LOC100247536	wikigene:LOC100247536
PFAM:PF00628	PFAM:PF12165	ScanProsite:PS01359	PFscan:PS50016	PANTHER:PTHR12321	PANTHER:PTHR12321:SF98
SMART:SM00249	SUPFAM:SSF57903	UniParc:UPI00021097F9	ArrayExpress:VIT_04s0008g01670	EnsemblPlantsGene:VIT_04s0008g01670	EnsemblPlants:VIT_04s0008g01670.t01
RefSeq:XP_002280895	RefSeq:XP_002280895.1	InterPro:Zinc_finger_PHD-type_CS	InterPro:Znf_FYVE_PHD	InterPro:Znf_PHD	InterPro:Znf_PHD-finger
InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr4:-:1292438..1296804

Molecular Weight (calculated)

29947.0 Da

IEP (calculated)

4.857

GRAVY (calculated)

-0.730

Length

264 amino acids

Sequence
(BLAST)

001: MDGGPPYNPR TVEEVFRDFK GRRAGMIKAL TTDVEEFYQQ CDPDKENLCL YGFPSEQWEV NLPAEEVPPE LPEPALGINF ARDGMQEKDW LSLVAVHSDA
101: WLLAVAFYFG ARFGFDKADR KRLFNMINDL PTIFEVVTGT AKKQVKEKSS VSNHSSNKSK SNSKVGKDFY FPNPIRGSES QGKYSKPLQA KDEDEEGLEE
201: EEEEEHGETL CGACGENYAS DEFWICCDVC EKWFHGKCVK ITPARAEHIK QYKCPSCSNK RARA

Best Arabidopsis Sequence Match ( AT5G20510.1 )
(BLAST)

001: MEGGTAHYSP RTVEEVFRDF KGRRAGIIQA LTTDVEDFFQ QCDPEKQNLC LYGFPNEVWE VNLPAEEVPP ELPEPALGIN FARDGMQERN WLSLVAVHSD
101: AWLLSVSFYF GSRFGFDRAD RKRLFSMINE VPTVYEVVTG NAEKQTKEMP SSANQNGNRS KSNSKMRGLE SKSSKTIHAK DEEEGLELEE GEEEEDEDED
201: EHGETLCGAC GDNYASDEFW ICCDMCEKWF HGECVKITPA RAEHIKHYKC PTCSNKRARP

Arabidopsis Description

AL5PHD finger protein ALFIN-LIKE 5 [Source:UniProtKB/Swiss-Prot;Acc:Q5XEM9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.